Rmu_sc0002665.1_g000014

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002665.1
OG0000330
Physical Location & Seq
Forward (+)
62844 .. 63407
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002665.1_g000014.1.cds

Sequence Viewer

Length: 366 bp
atgtctgagattttgggacagggaatttttgttgttaatggagagaaatggaggcagcagaggaagcttgctagctttgagttctcaacaaggaatcttgttagagttgtttttgagtttttggattccaaatgggtctttgatatgcaggatttgctaatgagatgtaccctggattccatattcaaagttgggtttcgaacagacctgaattggtatgtcaaagtcgcccatgattctgtgcaccaacttatcaggagaaagagggaacttctagctggcaagaaagattgtgtaagtgacaaggaggacatactatcaaggtttatggaaagtgagaaggatccagagcaaatgaatgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

121

Amino Acids

14.35

Weight (kDa)

7.78

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 338, 351
AcsI RAATTY 1 cut(s) 24
AfaI GTAC 1 cut(s) 169
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 3 cut(s) 67, 75, 278
AluI AGCT 3 cut(s) 67, 75, 278
Alw21I GWGCWC 1 cut(s) 246
Alw44I GTGCAC 1 cut(s) 242
AlwI GGATC 2 cut(s) 338, 351
ApaLI GTGCAC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 24
AsuII TTCGAA 1 cut(s) 199
AsuNHI GCTAGC 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 246
BamHI GGATCC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 173
BfaI CTAG 2 cut(s) 72, 275
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 173
BmtI GCTAGC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 246
BslFI GGGAC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 364
Bsp119I TTCGAA 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 345
BspOI GCTAGC 1 cut(s) 75
BspPI GGATC 2 cut(s) 338, 351
BspT104I TTCGAA 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 154
BstBI TTCGAA 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 69, 73, 280
BstDEI CTNAG 1 cut(s) 6
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 2 cut(s) 64, 154
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
Cac8I GCNNGC 3 cut(s) 69, 73, 280
Csp6I GTAC 1 cut(s) 168
CviAII CATG 2 cut(s) 233, 363
CviJI RGCY 3 cut(s) 67, 75, 278
CviKI_1 RGCY 3 cut(s) 67, 75, 278
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 364
FaeI CATG 2 cut(s) 236, 366
FaiI YATR 7 cut(s) 146, 182, 219, 234, 314, 329, 364
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 232, 362
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 2 cut(s) 72, 275
GluI GCNGC 1 cut(s) 56
Hin1II CATG 2 cut(s) 236, 366
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 4 cut(s) 94, 125, 176, 236
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 2 cut(s) 256, 347
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 334
HpyCH4V TGCA 3 cut(s) 148, 244, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 154
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 2 cut(s) 236, 366
Kzo9I GATC 1 cut(s) 343
LpnPI CCDG 8 cut(s) 5, 134, 158, 185, 221, 241, 264, 360
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 2 cut(s) 72, 275
MaeIII GTNAC 1 cut(s) 299
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 24, 211
MnlI CCTC 4 cut(s) 45, 54, 258, 301
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 64, 154
NdeII GATC 1 cut(s) 343
NheI GCTAGC 1 cut(s) 71
NlaIII CATG 2 cut(s) 236, 366
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 299
NsiI ATGCAT 1 cut(s) 364
NspV TTCGAA 1 cut(s) 199
PctI GAATGC 1 cut(s) 364
PfeI GAWTC 4 cut(s) 94, 125, 176, 236
PkrI GCNGC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 345
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 246
SetI ASST 5 cut(s) 69, 77, 210, 280, 326
SfuI TTCGAA 1 cut(s) 199
Sse9I AATT 2 cut(s) 24, 211
SspMI CTAG 2 cut(s) 72, 275
StyD4I CCNGG 1 cut(s) 171
TaqI TCGA 1 cut(s) 199
TasI AATT 2 cut(s) 24, 211
TfiI GAWTC 4 cut(s) 94, 125, 176, 236
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 299
VneI GTGCAC 1 cut(s) 242
XapI RAATTY 1 cut(s) 24
XspI CTAG 2 cut(s) 72, 275
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.