RchiOBHm_Chr1g0351061

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000330
Physical Location & Seq
Forward (+)
44250467 .. 44252616
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57686

Sequence Viewer

Length: 636 bp
ATGGAGAGCGAAAAGGAGCTAGAGGAAATGACTGATATGTATCTAAGGGATATAGCTCTAAATTTTATGTTTGCTGGCAAAGATTCCAGTGGAACTACATTCTTGTGGTTCTTCTATATGCTGTGCAAAAACCCTCTCATTCAAGAAAAGGTTGCACAAGAAGTGAGGGATGTAGTTGGTTTGAACCACAAAGCTAACATCGACGAGTTTGTGGCATATTTAACCGATGCAGCTCTTGAAAAAATGCATTATATTCATGCAGCACTGACAGAGACCTTGAGGCTGTACCCTGCAGTTCCTGTGGTGATGGAGTGTTCTACATGGCCTATATATGCCATGGGCAGAATGCCTTATATATGGGGAGAATATGCTGAGGATTTTCGACCAGAAAGATGGCTCCAAAATGGAATTTTCCTGCCTGAATCTTCTTTCAAATTCGTCTCATTGCATGCTGGTCCTCGGATTTGTATAGGGAAGGACTTTGCTTACGGGCAAATGAAGATAGTATCAATGACACTTCTGTGCTACTTTCGCTTTAAATTGGTGGATGAAACAAAAATCGCAACCTATAGAACCATGTTCACCCTGCACATGGATGGAGGTCTCCCTATGCGCGCAATTCCGAGGACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

211

Amino Acids

24.54

Weight (kDa)

5.76

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 4 - 188 2e-32 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 615
AcsI RAATTY 3 cut(s) 61, 408, 434
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 592
AgsI TTSAA 4 cut(s) 143, 184, 239, 433
AleI CACNNNNGTG 1 cut(s) 520
AluBI AGCT 4 cut(s) 19, 56, 194, 233
AluI AGCT 4 cut(s) 19, 56, 194, 233
Alw26I GTCTC 3 cut(s) 266, 445, 608
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 230, 260
ApoI RAATTY 3 cut(s) 61, 408, 434
AspLEI GCGC 2 cut(s) 615, 617
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 2 cut(s) 316, 574
AvaII GGWCC 1 cut(s) 455
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 242, 272
BccI CCATC 3 cut(s) 301, 387, 590
BcoDI GTCTC 3 cut(s) 266, 445, 608
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 2 cut(s) 291, 568
BisI GCNGC 2 cut(s) 231, 261
BlsI GCNGC 2 cut(s) 232, 262
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 398
BmsI GCATC 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 39
BsaI GGTCTC 2 cut(s) 266, 608
BsaJI CCNNGG 3 cut(s) 336, 458, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse1I ACTGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 443
Bse8I GATNNNNATC 1 cut(s) 39
BseDI CCNNGG 3 cut(s) 336, 458, 623
BseGI GGATG 3 cut(s) 175, 553, 601
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 592
BseMI GCAATG 1 cut(s) 443
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 87
BsePI GCGCGC 1 cut(s) 613
BseXI GCAGC 2 cut(s) 242, 272
BsgI GTGCAG 1 cut(s) 572
Bsh1236I CGCG 1 cut(s) 615
BshFI GGCC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 592
BsmAI GTCTC 3 cut(s) 266, 445, 608
BsmBI CGTCTC 1 cut(s) 445
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 1 cut(s) 325
Bso31I GGTCTC 2 cut(s) 266, 608
Bsp19I CCATGG 1 cut(s) 336
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 1 cut(s) 364
BspFNI CGCG 1 cut(s) 615
BspLI GGNNCC 1 cut(s) 398
BspMAI CTGCAG 1 cut(s) 295
BspTNI GGTCTC 2 cut(s) 266, 608
BsrDI GCAATG 1 cut(s) 443
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 3 cut(s) 336, 458, 623
BssHII GCGCGC 1 cut(s) 613
BssT1I CCWWGG 1 cut(s) 336
BstC8I GCNNGC 3 cut(s) 76, 450, 615
BstDEI CTNAG 2 cut(s) 44, 372
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 175, 553, 601
BstFNI CGCG 1 cut(s) 615
BstHHI GCGC 2 cut(s) 615, 617
BstMAI GTCTC 3 cut(s) 266, 445, 608
BstMWI GCNNNNNNNGC 1 cut(s) 531
BstNSI RCATGY 1 cut(s) 452
BstSFI CTRYAG 2 cut(s) 291, 568
BstUI CGCG 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 242, 272
BstXI CCANNNNNNTGG 1 cut(s) 393
BsuRI GGCC 1 cut(s) 325
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 3 cut(s) 175, 553, 601
BtsIMutI CAGTG 2 cut(s) 94, 263
Cac8I GCNNGC 3 cut(s) 76, 450, 615
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 2 cut(s) 615, 617
Cfr13I GGNCC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 286
CviAII CATG 7 cut(s) 257, 321, 337, 449, 577, 592, 633
CviJI RGCY 7 cut(s) 19, 56, 194, 233, 283, 325, 397
CviKI_1 RGCY 7 cut(s) 19, 56, 194, 233, 283, 325, 397
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 44, 372
DraI TTTAAA 1 cut(s) 538
Eco130I CCWWGG 1 cut(s) 336
Eco31I GGTCTC 2 cut(s) 266, 608
Eco47I GGWCC 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 445
FaeI CATG 7 cut(s) 260, 324, 340, 452, 580, 595, 636
FatI CATG 7 cut(s) 256, 320, 336, 448, 576, 591, 632
Fnu4HI GCNGC 2 cut(s) 231, 261
FokI GGATG 3 cut(s) 182, 560, 608
Fsp4HI GCNGC 2 cut(s) 231, 261
FspBI CTAG 1 cut(s) 20
GlaI GCGC 2 cut(s) 614, 616
GluI GCNGC 2 cut(s) 231, 261
HaeIII GGCC 1 cut(s) 325
HhaI GCGC 2 cut(s) 615, 617
Hin1II CATG 7 cut(s) 260, 324, 340, 452, 580, 595, 636
Hin6I GCGC 2 cut(s) 613, 615
HinP1I GCGC 2 cut(s) 613, 615
HinfI GANTC 2 cut(s) 83, 422
HphI GGTGA 2 cut(s) 316, 574
Hpy166II GTNNAC 1 cut(s) 582
Hpy188I TCNGA 2 cut(s) 462, 624
Hpy188III TCNNGA 2 cut(s) 143, 236
Hpy8I GTNNAC 1 cut(s) 582
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 469
HpyCH4V TGCA 8 cut(s) 126, 155, 230, 247, 260, 293, 448, 589
HpyF10VI GCNNNNNNNGC 1 cut(s) 531
HpyF3I CTNAG 2 cut(s) 44, 372
Hsp92II CATG 7 cut(s) 260, 324, 340, 452, 580, 595, 636
HspAI GCGC 2 cut(s) 613, 615
LmnI GCTCC 2 cut(s) 16, 402
LpnPI CCDG 9 cut(s) 60, 100, 303, 312, 399, 428, 432, 438, 599
Lsp1109I GCAGC 2 cut(s) 242, 272
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 20
MboII GAAGA 3 cut(s) 103, 417, 511
MluCI AATT 5 cut(s) 61, 408, 434, 539, 618
MnlI CCTC 8 cut(s) 16, 144, 159, 273, 367, 468, 593, 618
Mph1103I ATGCAT 1 cut(s) 249
MseI TTAA 2 cut(s) 221, 537
MslI CAYNNNNRTG 3 cut(s) 103, 520, 594
Mva1269I GAATGC 1 cut(s) 351
MvnI CGCG 1 cut(s) 615
MwoI GCNNNNNNNGC 1 cut(s) 531
NcoI CCATGG 1 cut(s) 336
NlaIII CATG 7 cut(s) 260, 324, 340, 452, 580, 595, 636
NlaIV GGNNCC 1 cut(s) 398
NsiI ATGCAT 1 cut(s) 249
NspI RCATGY 1 cut(s) 452
OliI CACNNNNGTG 1 cut(s) 520
PaeI GCATGC 1 cut(s) 452
PauI GCGCGC 1 cut(s) 613
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 2 cut(s) 83, 422
PkrI GCNGC 2 cut(s) 232, 262
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 299
PteI GCGCGC 1 cut(s) 613
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 3 cut(s) 103, 520, 594
SaqAI TTAA 2 cut(s) 221, 537
SatI GCNGC 2 cut(s) 231, 261
Sau96I GGNCC 1 cut(s) 455
SetI ASST 8 cut(s) 21, 58, 153, 196, 235, 278, 569, 604
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 2 cut(s) 291, 568
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 3 cut(s) 103, 520, 594
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SphI GCATGC 1 cut(s) 452
Sse9I AATT 5 cut(s) 61, 408, 434, 539, 618
SspMI CTAG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 336
TaqI TCGA 2 cut(s) 201, 382
TasI AATT 5 cut(s) 61, 408, 434, 539, 618
TfiI GAWTC 2 cut(s) 83, 422
Tru1I TTAA 2 cut(s) 221, 537
Tru9I TTAA 2 cut(s) 221, 537
TscAI CASTG 2 cut(s) 94, 270
TseI GCWGC 2 cut(s) 230, 260
TspDTI ATGAA 3 cut(s) 245, 512, 564
TspRI CASTG 2 cut(s) 94, 270
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 3 cut(s) 61, 408, 434
XceI RCATGY 1 cut(s) 452
XspI CTAG 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.