Rw1G020000

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000330
Physical Location & Seq
Reverse (-)
43364500 .. 43367160
2661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020000.1

Sequence Viewer

Length: 1221 bp
ATGGGTTTGCTGTATATCATCTTCAGGTTCACATTTTCATTACTCTCTCTGTTCCTCTCCCTCTTCTCTTTTCTCATAAAATGCCCAACTCACCGGCTTCTTGCTCTAAACAGCAGCGCAGTATACACATGTGACCCTCGAAACATTGAGCATTTTCTCAAGACCAACTTTGCTCATTACTCGAAAAGTGACTATAACCAATGTATTATGTCTGAGATTTTGGGACAGGGCATTTTTGTTCTTTTTGAGTTCTCAACAAGGAATCTTGTTAGAGTTGTTTTTGAGTTTTTGGATTCCAAAAGGGTCTTTGATATGCAGGATTTGCTTATGAGATGTACCCTGGATTCCATATTCAAAGTTGGGTTTCGAACAGACCTGAATTGGGTCAACTGCTCTGATCCATTCTGGAAGTTGAAAAGATTTCTCAATATTGGTTCTGAGGCCACTCTTAAACAGTATGTCAAAGTCGCCCATGATTTTGTGCACCAACTTATCAGGAGAAAGAGGGAACTTCTAGCTGGCAAGAAAGATGGTGCAAGTGACAAGGAGGACATACTATCAAGGTTTATGGAAAGTGAGAAGGATCCAGAGCAAATGAATGACAAATATCCAGGTGATATAATTCTGAATTTTATGATAGCTGCCAAAGATACAAGTGCAAATACACTGTCATGGATGTTGTCTGTATATATGAAACATGACGCTGACATTGATGAATTTGTGACGAACATGACTGATGCAACTCTTGAAAAGATGCAGTATCTTCATGCCACACTAACAGAGATCTTGAGGCTCTACCCTGAAGTTCCTGTGAATGGGAGGTTTGCAGAGGTAGATGACATTCTTCCTGATGGCTTTAGAGTGAAAAAAGGAGACGGAATAGCTTACATGGCCTATGCCATGGGGAGAATGCCTTACATTTGGGGAGAAGATGCTGAGGATTTCCAACCTGAAAGATGGCTCGGTAATGGAGTTTTCAAGCCCGAATCACCTTTCAAATTCATCGCATTTCATGCAGGACCTCGGACCTGTCTAGGGAAGGACTTTGCTAACATGCAGATTAAGATAGTAGCAATGGCTCTTCTTTGCTTCTTCCGCTTCAAATTGGCTGATGAAACAAGAAATGGGTGTGTATTTAAAACTTCTCCCACCCTTCACATAGATGGCACCCTCCCTATGCTTGCACTTCCAAGGACCACCTCACAGATTATTTTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

406

Amino Acids

46.86

Weight (kDa)

6.76

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 128 - 374 1.7e-42 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1166
AccI GTMKAC 1 cut(s) 123
AciI CCGC 1 cut(s) 1096
AclWI GGATC 3 cut(s) 392, 578, 591
AcsI RAATTY 3 cut(s) 628, 716, 998
AcuI CTGAAG 2 cut(s) 7, 822
AfaI GTAC 1 cut(s) 337
AfiI CCNNNNNNNGG 3 cut(s) 382, 815, 1035
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 6 cut(s) 355, 415, 749, 979, 997, 1102
AjnI CCWGG 2 cut(s) 339, 610
AluBI AGCT 3 cut(s) 518, 641, 884
AluI AGCT 3 cut(s) 518, 641, 884
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 1 cut(s) 867
Alw44I GTGCAC 1 cut(s) 482
AlwI GGATC 3 cut(s) 392, 578, 591
AoxI GGCC 2 cut(s) 441, 891
ApaLI GTGCAC 1 cut(s) 482
ApeKI GCWGC 2 cut(s) 114, 641
ApoI RAATTY 3 cut(s) 628, 716, 998
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 3 cut(s) 1019, 1026, 1194
AsuHPI GGTGA 3 cut(s) 83, 626, 981
AsuII TTCGAA 1 cut(s) 367
AvaII GGWCC 3 cut(s) 1019, 1026, 1194
BaeGI GKGCMC 1 cut(s) 486
BamHI GGATCC 1 cut(s) 583
BanI GGYRCC 1 cut(s) 1166
BarI GAAGNNNNNNTAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 486
BbvCI CCTCAGC 1 cut(s) 936
BbvI GCAGC 2 cut(s) 126, 628
BccI CCATC 4 cut(s) 524, 845, 951, 1157
BciT130I CCWGG 2 cut(s) 341, 612
BcoDI GTCTC 1 cut(s) 867
BfaI CTAG 2 cut(s) 515, 1034
BglII AGATCT 1 cut(s) 783
BisI GCNGC 2 cut(s) 115, 642
BlsI GCNGC 2 cut(s) 116, 643
Bme1390I CCNGG 2 cut(s) 341, 612
Bme18I GGWCC 3 cut(s) 1019, 1026, 1194
BmgT120I GGNCC 3 cut(s) 1019, 1026, 1194
BmiI GGNNCC 2 cut(s) 585, 1168
BmrFI CCNGG 2 cut(s) 341, 612
BmsI GCATC 3 cut(s) 727, 744, 922
Bpu10I CCTNAGC 1 cut(s) 936
Bpu14I TTCGAA 1 cut(s) 367
BpuEI CTTGAG 2 cut(s) 143, 808
BsaJI CCNNGG 4 cut(s) 339, 900, 1022, 1190
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 815, 1035
Bse118I RCCGGY 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 1080
BseBI CCWGG 2 cut(s) 341, 612
BseDI CCNNGG 4 cut(s) 339, 900, 1022, 1190
BseGI GGATG 1 cut(s) 681
BseLI CCNNNNNNNGG 3 cut(s) 382, 815, 1035
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 3 cut(s) 204, 429, 927
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 2 cut(s) 126, 628
BshFI GGCC 2 cut(s) 443, 893
BshNI GGYRCC 1 cut(s) 1166
BsiHKAI GWGCWC 1 cut(s) 486
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 3 cut(s) 382, 815, 1035
BsmAI GTCTC 1 cut(s) 867
BsmBI CGTCTC 1 cut(s) 867
BsmFI GGGAC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 915
BsnI GGCC 2 cut(s) 443, 893
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 3 cut(s) 397, 583, 783
Bsp19I CCATGG 1 cut(s) 900
BspACI CCGC 1 cut(s) 1096
BspANI GGCC 2 cut(s) 443, 893
BspCNI CTCAG 3 cut(s) 205, 430, 928
BspLI GGNNCC 2 cut(s) 585, 1168
BspPI GGATC 3 cut(s) 392, 578, 591
BspQI GCTCTTC 1 cut(s) 1086
BspT104I TTCGAA 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 1166
BsrDI GCAATG 1 cut(s) 1080
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 4 cut(s) 339, 900, 1022, 1190
BssMI GATC 3 cut(s) 397, 583, 783
BssNAI GTATAC 1 cut(s) 124
BssT1I CCWWGG 2 cut(s) 900, 1190
Bst1107I GTATAC 1 cut(s) 124
Bst2UI CCWGG 2 cut(s) 341, 612
Bst4CI ACNGT 2 cut(s) 456, 669
Bst6I CTCTTC 2 cut(s) 68, 1086
BstAPI GCANNNNNTGC 2 cut(s) 322, 1013
BstBI TTCGAA 1 cut(s) 367
BstC8I GCNNGC 2 cut(s) 520, 1182
BstDEI CTNAG 3 cut(s) 213, 438, 936
BstDSI CCRYGG 1 cut(s) 900
BstF5I GGATG 1 cut(s) 681
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 3 cut(s) 400, 586, 786
BstMAI GTCTC 1 cut(s) 867
BstMBI GATC 3 cut(s) 397, 583, 783
BstMWI GCNNNNNNNGC 4 cut(s) 322, 890, 1013, 1095
BstNI CCWGG 2 cut(s) 341, 612
BstNSI RCATGY 2 cut(s) 132, 1057
BstSCI CCNGG 2 cut(s) 339, 610
BstSLI GKGCMC 1 cut(s) 486
BstV1I GCAGC 2 cut(s) 126, 628
BstX2I RGATCY 2 cut(s) 583, 783
BstYI RGATCY 2 cut(s) 583, 783
BstZ17I GTATAC 1 cut(s) 124
BsuRI GGCC 2 cut(s) 443, 893
BtgI CCRYGG 1 cut(s) 900
BtgZI GCGATG 1 cut(s) 988
BtsCI GGATG 1 cut(s) 681
BtsIMutI CAGTG 1 cut(s) 665
Cac8I GCNNGC 2 cut(s) 520, 1182
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 3 cut(s) 1019, 1026, 1194
CseI GACGC 1 cut(s) 710
Csp6I GTAC 1 cut(s) 336
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 3 cut(s) 213, 438, 936
DpnI GATC 3 cut(s) 399, 585, 785
DpnII GATC 3 cut(s) 397, 583, 783
DraI TTTAAA 1 cut(s) 1138
Eam1104I CTCTTC 2 cut(s) 68, 1086
EarI CTCTTC 2 cut(s) 68, 1086
Eco130I CCWWGG 2 cut(s) 900, 1190
Eco47I GGWCC 3 cut(s) 1019, 1026, 1194
Eco57I CTGAAG 2 cut(s) 7, 822
EcoO109I RGGNCCY 1 cut(s) 1019
EcoRII CCWGG 2 cut(s) 339, 610
EcoT14I CCWWGG 2 cut(s) 900, 1190
ErhI CCWWGG 2 cut(s) 900, 1190
Esp3I CGTCTC 1 cut(s) 867
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 237
FauNDI CATATG 1 cut(s) 1217
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 115, 642
FokI GGATG 1 cut(s) 688
Fsp4HI GCNGC 2 cut(s) 115, 642
FspBI CTAG 2 cut(s) 515, 1034
GlaI GCGC 1 cut(s) 118
GluI GCNGC 2 cut(s) 115, 642
HaeIII GGCC 2 cut(s) 443, 893
HapII CCGG 1 cut(s) 94
HgaI GACGC 1 cut(s) 710
HhaI GCGC 1 cut(s) 119
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 4 cut(s) 262, 293, 344, 986
HpaII CCGG 1 cut(s) 94
HphI GGTGA 3 cut(s) 83, 626, 981
Hpy166II GTNNAC 4 cut(s) 30, 124, 388, 484
Hpy188I TCNGA 5 cut(s) 214, 397, 439, 627, 1026
Hpy188III TCNNGA 7 cut(s) 160, 406, 496, 587, 746, 787, 848
Hpy8I GTNNAC 4 cut(s) 30, 124, 388, 484
HpyAV CCTTC 3 cut(s) 574, 1033, 1163
HpyCH4III ACNGT 2 cut(s) 456, 669
HpyF10VI GCNNNNNNNGC 4 cut(s) 322, 890, 1013, 1095
HpyF3I CTNAG 3 cut(s) 213, 438, 936
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 3 cut(s) 397, 583, 783
LguI GCTCTTC 1 cut(s) 1086
Lsp1109I GCAGC 2 cut(s) 126, 628
LweI GCATC 3 cut(s) 727, 744, 922
MaeI CTAG 2 cut(s) 515, 1034
MaeIII GTNAC 4 cut(s) 131, 188, 539, 721
MalI GATC 3 cut(s) 399, 585, 785
MboI GATC 3 cut(s) 397, 583, 783
MboII GAAGA 7 cut(s) 13, 55, 755, 836, 941, 1073, 1084
MflI RGATCY 2 cut(s) 583, 783
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 6 cut(s) 379, 621, 628, 716, 998, 1103
MmeI TCCRAC 1 cut(s) 970
MseI TTAA 3 cut(s) 450, 1062, 1137
MslI CAYNNNNRTG 2 cut(s) 670, 1161
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 2 cut(s) 341, 612
Mva1269I GAATGC 1 cut(s) 915
MvaI CCWGG 2 cut(s) 341, 612
MwoI GCNNNNNNNGC 4 cut(s) 322, 890, 1013, 1095
NcoI CCATGG 1 cut(s) 900
NdeI CATATG 1 cut(s) 1217
NdeII GATC 3 cut(s) 397, 583, 783
NlaIV GGNNCC 2 cut(s) 585, 1168
NmuCI GTSAC 4 cut(s) 131, 188, 539, 721
NspI RCATGY 2 cut(s) 132, 1057
NspV TTCGAA 1 cut(s) 367
PciI ACATGT 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 1086
PctI GAATGC 1 cut(s) 915
PfeI GAWTC 4 cut(s) 262, 293, 344, 986
PkrI GCNGC 2 cut(s) 116, 643
PpuMI RGGWCCY 1 cut(s) 1019
PscI ACATGT 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 1019
Psp6I CCWGG 2 cut(s) 339, 610
PspGI CCWGG 2 cut(s) 339, 610
PspN4I GGNNCC 2 cut(s) 585, 1168
PspPI GGNCC 3 cut(s) 1019, 1026, 1194
PspPPI RGGWCCY 1 cut(s) 1019
PsuI RGATCY 2 cut(s) 583, 783
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
RseI CAYNNNNRTG 2 cut(s) 670, 1161
SapI GCTCTTC 1 cut(s) 1086
SaqAI TTAA 3 cut(s) 450, 1062, 1137
SatI GCNGC 2 cut(s) 115, 642
Sau3AI GATC 3 cut(s) 397, 583, 783
Sau96I GGNCC 3 cut(s) 1019, 1026, 1194
ScrFI CCNGG 2 cut(s) 341, 612
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 3 cut(s) 727, 744, 922
SfuI TTCGAA 1 cut(s) 367
SinI GGWCC 3 cut(s) 1019, 1026, 1194
SmiMI CAYNNNNRTG 2 cut(s) 670, 1161
SmlI CTYRAG 2 cut(s) 158, 787
SmoI CTYRAG 2 cut(s) 158, 787
Sse9I AATT 6 cut(s) 379, 621, 628, 716, 998, 1103
SsiI CCGC 1 cut(s) 1096
SspI AATATT 1 cut(s) 430
SspMI CTAG 2 cut(s) 515, 1034
StyD4I CCNGG 2 cut(s) 339, 610
StyI CCWWGG 2 cut(s) 900, 1190
TaaI ACNGT 2 cut(s) 456, 669
TaqI TCGA 3 cut(s) 139, 182, 367
TasI AATT 6 cut(s) 379, 621, 628, 716, 998, 1103
TfiI GAWTC 4 cut(s) 262, 293, 344, 986
Tru1I TTAA 3 cut(s) 450, 1062, 1137
Tru9I TTAA 3 cut(s) 450, 1062, 1137
TscAI CASTG 1 cut(s) 672
TseFI GTSAC 4 cut(s) 131, 188, 539, 721
TseI GCWGC 2 cut(s) 114, 641
Tsp45I GTSAC 4 cut(s) 131, 188, 539, 721
TspDTI ATGAA 9 cut(s) 27, 611, 707, 729, 755, 991, 1001, 1128, 1204
TspGWI ACGGA 1 cut(s) 891
TspRI CASTG 1 cut(s) 672
VneI GTGCAC 1 cut(s) 482
VpaK11BI GGWCC 3 cut(s) 1019, 1026, 1194
XapI RAATTY 3 cut(s) 628, 716, 998
XceI RCATGY 2 cut(s) 132, 1057
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 2 cut(s) 515, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.