Rw1G020050

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000330
Physical Location & Seq
Forward (+)
43467242 .. 43469718
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020050.1

Sequence Viewer

Length: 1254 bp
ATGCTCAAAACCAGATTTGCTCACTACACAAAAGGGGAGTATAACCAGACTATTGTGAGAGATGTTTTTGGGCATGGGATTTTTGCTGTGGATGGAGATAAGTGGAGGCAGCAGAGGAAGCTTGCGAGTTTTGAGTTTTCAACCAGGGTTTTGAGGGATTTTAGCTGTTCTGTTTTTAGGAGAAGTGCTGCCAAAATTGTCAGAAAGGTTTCGGAGTTTTCCAAGTCCAGTGAGGTTTTTGATATGCAGGATTTGCTTATGAGATGCACCTTGGATTCCATATTCAAAGTTGGATTTGGTATAGAACTGAGTTGCATGGAGGGTTCAAGCAAAGAAGGGCTAGCATTCATGAAGGCATTTGATGAGTCAACTGCTCTGACCTACTGGCGCTATGTTGATCCATTCTGGAAATTGAAAAGAATTCTTAACATTGGTTCTGAAGCCACCCTTAAAAATTATGTCAAAGTCATTCATGACTTTGTGCACCAACTTATCAGGAGAAAGAGGACATTACTAGTAGCCAGAAAGATAAATGACAGGCAGGACATCCTATCACGATTTCTATTGGAGAGCGAGAAGAATCCAGAGGAGATGAATGATAAATATCTAAGTGACATAATTCTGAATTTTATGATTGCTGGGAAAGATACCAGTGCAAATACACTCTCATGGTTCTTCTACATGCTCAGCAAGAATCCTCTAATACAGGAAAAAGTTGCACAAGAAGTGAGGGATGTCGTTGGTCTGAATCATGAAGCCAGCATTGATGAATTTGTGGCCAATATAACCGATGCAGCTCTTGAAAAAATGCACTATCTTCATGCGGCATTAACAGAGACCTTGAGGCTATACCCAGCAGTTCCTATTGATGGGAGACATGCAGAGGTAGATGACATTCTTCCTGATGGCTTTAGAGTGAAAAAAGGAGATTCAATTAACTACATGAGTTATGCCATGGCCAGAATGCCTTATATTTGGGGAAAGGATGCAGAGGAGTATAGACCTGAAAGATGGCTCAACAATGGAATTTTCCAGCCTGAATCACCTTTCAAATTCGTCGCATTTCATGCTGGTCCTCGGATCTGTCTGGGGAAGGACTTTGCTTATCGGCAGATGAAGATAGTAGCAATGGCTCTTCTTTGCTTCTTCCGCTTCAAATTGGCCGATGAAACAAAAAATGTGACCTATAGGACCATGTTCACCCTTCACATTGATGGAAGTCTTCCTTTGGTTGCCCTTCCAAGGAAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

417

Amino Acids

48.39

Weight (kDa)

9.1

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 21 - 402 9.8e-75 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 824, 1150
AclWI GGATC 2 cut(s) 392, 1088
AcoI YGGCCR 3 cut(s) 777, 957, 1161
AcsI RAATTY 5 cut(s) 420, 625, 770, 1026, 1052
AcuI CTGAAG 1 cut(s) 459
AfiI CCNNNNNNNGG 2 cut(s) 869, 1242
AgsI TTSAA 8 cut(s) 141, 286, 327, 415, 803, 933, 1051, 1156
AhlI ACTAGT 1 cut(s) 514
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 3 cut(s) 121, 165, 797
AluI AGCT 3 cut(s) 121, 165, 797
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 2 cut(s) 830, 868
Alw44I GTGCAC 1 cut(s) 482
AlwI GGATC 2 cut(s) 392, 1088
AoxI GGCC 3 cut(s) 777, 957, 1161
ApaLI GTGCAC 1 cut(s) 482
ApeKI GCWGC 3 cut(s) 109, 188, 794
ApoI RAATTY 5 cut(s) 420, 625, 770, 1026, 1052
Asp700I GAANNNNTTC 1 cut(s) 208
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 1073, 1191
AsuHPI GGTGA 2 cut(s) 1035, 1192
AsuNHI GCTAGC 1 cut(s) 340
AvaII GGWCC 2 cut(s) 1073, 1191
BaeGI GKGCMC 1 cut(s) 486
BalI TGGCCA 2 cut(s) 779, 959
BbsI GAAGAC 1 cut(s) 1214
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 3 cut(s) 121, 175, 806
BccI CCATC 5 cut(s) 86, 863, 899, 1005, 1208
BciT130I CCWGG 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 830, 868
BcuI ACTAGT 1 cut(s) 514
BfaI CTAG 2 cut(s) 341, 515
BfmI CTRYAG 1 cut(s) 1186
BfoI RGCGCY 1 cut(s) 391
BisI GCNGC 4 cut(s) 110, 189, 795, 825
BlpI GCTNAGC 1 cut(s) 686
BlsI GCNGC 4 cut(s) 111, 190, 796, 826
Bme1390I CCNGG 1 cut(s) 145
Bme18I GGWCC 2 cut(s) 1073, 1191
BmgT120I GGNCC 2 cut(s) 1073, 1191
BmrFI CCNGG 1 cut(s) 145
BmsI GCATC 3 cut(s) 254, 781, 976
BmtI GCTAGC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 1214
Bpu1102I GCTNAGC 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 862
BsaBI GATNNNNATC 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 5 cut(s) 144, 270, 954, 1076, 1241
Bsc4I CCNNNNNNNGG 2 cut(s) 869, 1242
Bse1I ACTGG 3 cut(s) 228, 389, 651
Bse3DI GCAATG 1 cut(s) 1134
Bse8I GATNNNNATC 1 cut(s) 603
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 5 cut(s) 144, 270, 954, 1076, 1241
BseGI GGATG 4 cut(s) 97, 546, 739, 991
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 2 cut(s) 869, 1242
BseMI GCAATG 1 cut(s) 1134
BseMII CTCAG 2 cut(s) 299, 700
BseNI ACTGG 3 cut(s) 228, 389, 651
BseRI GAGGAG 2 cut(s) 602, 1007
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 3 cut(s) 121, 175, 806
BseYI CCCAGC 2 cut(s) 638, 853
BshFI GGCC 3 cut(s) 779, 959, 1163
BsiHKAI GWGCWC 1 cut(s) 486
BslI CCNNNNNNNGG 2 cut(s) 869, 1242
BsmAI GTCTC 2 cut(s) 830, 868
BsmI GAATGC 2 cut(s) 344, 969
BsnI GGCC 3 cut(s) 779, 959, 1163
Bso31I GGTCTC 1 cut(s) 830
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 2 cut(s) 397, 1080
Bsp1720I GCTNAGC 1 cut(s) 686
Bsp19I CCATGG 1 cut(s) 954
BspACI CCGC 2 cut(s) 824, 1150
BspANI GGCC 3 cut(s) 779, 959, 1163
BspCNI CTCAG 2 cut(s) 300, 699
BspHI TCATGA 3 cut(s) 348, 472, 751
BspOI GCTAGC 1 cut(s) 344
BspPI GGATC 2 cut(s) 392, 1088
BspQI GCTCTTC 1 cut(s) 1140
BspTNI GGTCTC 1 cut(s) 830
BsrDI GCAATG 1 cut(s) 1134
BsrI ACTGG 3 cut(s) 228, 389, 651
BssECI CCNNGG 5 cut(s) 144, 270, 954, 1076, 1241
BssMI GATC 2 cut(s) 397, 1080
BssT1I CCWWGG 3 cut(s) 270, 954, 1241
Bst2UI CCWGG 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 1140
BstAPI GCANNNNNTGC 2 cut(s) 253, 1067
BstC8I GCNNGC 3 cut(s) 123, 342, 760
BstDEI CTNAG 3 cut(s) 308, 608, 686
BstDSI CCRYGG 1 cut(s) 954
BstF5I GGATG 4 cut(s) 97, 546, 739, 991
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 2 cut(s) 400, 1083
BstMAI GTCTC 2 cut(s) 830, 868
BstMBI GATC 2 cut(s) 397, 1080
BstMWI GCNNNNNNNGC 4 cut(s) 118, 253, 1067, 1149
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 2 cut(s) 685, 881
BstSCI CCNGG 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 1186
BstSLI GKGCMC 1 cut(s) 486
BstV1I GCAGC 3 cut(s) 121, 175, 806
BstV2I GAAGAC 1 cut(s) 1214
BstX2I RGATCY 1 cut(s) 1080
BstYI RGATCY 1 cut(s) 1080
BsuRI GGCC 3 cut(s) 779, 959, 1163
BtgI CCRYGG 1 cut(s) 954
BtsCI GGATG 4 cut(s) 97, 546, 739, 991
BtsIMutI CAGTG 2 cut(s) 235, 658
Cac8I GCNNGC 3 cut(s) 123, 342, 760
CciI TCATGA 3 cut(s) 348, 472, 751
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 1073, 1191
DdeI CTNAG 3 cut(s) 308, 608, 686
DpnI GATC 2 cut(s) 399, 1082
DpnII GATC 2 cut(s) 397, 1080
EaeI YGGCCR 3 cut(s) 777, 957, 1161
Eam1104I CTCTTC 1 cut(s) 1140
EarI CTCTTC 1 cut(s) 1140
Eco130I CCWWGG 3 cut(s) 270, 954, 1241
Eco31I GGTCTC 1 cut(s) 830
Eco47I GGWCC 2 cut(s) 1073, 1191
Eco57I CTGAAG 1 cut(s) 459
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 3 cut(s) 270, 954, 1241
ErhI CCWWGG 3 cut(s) 270, 954, 1241
FalI AAGNNNNNCTT 4 cut(s) 432, 464, 1210, 1242
Fnu4HI GCNGC 4 cut(s) 110, 189, 795, 825
FokI GGATG 4 cut(s) 104, 533, 746, 998
Fsp4HI GCNGC 4 cut(s) 110, 189, 795, 825
FspBI CTAG 2 cut(s) 341, 515
GlaI GCGC 1 cut(s) 389
GluI GCNGC 4 cut(s) 110, 189, 795, 825
GsaI CCCAGC 2 cut(s) 642, 857
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 3 cut(s) 779, 959, 1163
HhaI GCGC 1 cut(s) 390
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 7 cut(s) 275, 365, 580, 694, 748, 929, 1040
HphI GGTGA 2 cut(s) 1035, 1192
Hpy166II GTNNAC 3 cut(s) 369, 484, 1200
Hpy188I TCNGA 7 cut(s) 203, 214, 378, 439, 624, 747, 1080
Hpy188III TCNNGA 9 cut(s) 349, 406, 473, 496, 555, 584, 752, 800, 902
Hpy8I GTNNAC 3 cut(s) 369, 484, 1200
Hpy99I CGWCG 1 cut(s) 1061
HpyAV CCTTC 5 cut(s) 329, 346, 1087, 1214, 1247
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 253, 1067, 1149
HpyF3I CTNAG 3 cut(s) 308, 608, 686
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 2 cut(s) 397, 1080
LguI GCTCTTC 1 cut(s) 1140
Lsp1109I GCAGC 3 cut(s) 121, 175, 806
LweI GCATC 3 cut(s) 254, 781, 976
MaeI CTAG 2 cut(s) 341, 515
MaeIII GTNAC 2 cut(s) 611, 1180
MalI GATC 2 cut(s) 399, 1082
MboI GATC 2 cut(s) 397, 1080
MboII GAAGA 8 cut(s) 589, 667, 809, 890, 1127, 1129, 1138, 1214
MflI RGATCY 1 cut(s) 1080
MhlI GDGCHC 1 cut(s) 486
MlsI TGGCCA 2 cut(s) 779, 959
MluNI TGGCCA 2 cut(s) 779, 959
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 271
Mox20I TGGCCA 2 cut(s) 779, 959
MroXI GAANNNNTTC 1 cut(s) 208
MscI TGGCCA 2 cut(s) 779, 959
MseI TTAA 4 cut(s) 426, 450, 830, 936
MslI CAYNNNNRTG 2 cut(s) 667, 1212
Msp20I TGGCCA 2 cut(s) 779, 959
MspR9I CCNGG 1 cut(s) 145
Mva1269I GAATGC 2 cut(s) 344, 969
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 4 cut(s) 118, 253, 1067, 1149
NcoI CCATGG 1 cut(s) 954
NdeII GATC 2 cut(s) 397, 1080
NheI GCTAGC 1 cut(s) 340
NmuCI GTSAC 2 cut(s) 611, 1180
NspI RCATGY 2 cut(s) 685, 881
PagI TCATGA 3 cut(s) 348, 472, 751
PciSI GCTCTTC 1 cut(s) 1140
PctI GAATGC 2 cut(s) 344, 969
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 6 cut(s) 275, 580, 694, 748, 929, 1040
PkrI GCNGC 4 cut(s) 111, 190, 796, 826
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 143
PspFI CCCAGC 2 cut(s) 638, 853
PspGI CCWGG 1 cut(s) 143
PspPI GGNCC 2 cut(s) 1073, 1191
PsuI RGATCY 1 cut(s) 1080
RseI CAYNNNNRTG 2 cut(s) 667, 1212
SapI GCTCTTC 1 cut(s) 1140
SaqAI TTAA 4 cut(s) 426, 450, 830, 936
SatI GCNGC 4 cut(s) 110, 189, 795, 825
Sau3AI GATC 2 cut(s) 397, 1080
Sau96I GGNCC 2 cut(s) 1073, 1191
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 3 cut(s) 254, 781, 976
SfcI CTRYAG 1 cut(s) 1186
SinI GGWCC 2 cut(s) 1073, 1191
SmiMI CAYNNNNRTG 2 cut(s) 667, 1212
SmlI CTYRAG 1 cut(s) 841
SmoI CTYRAG 1 cut(s) 841
SpeI ACTAGT 1 cut(s) 514
SsiI CCGC 2 cut(s) 824, 1150
SspMI CTAG 2 cut(s) 341, 515
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 3 cut(s) 270, 954, 1241
TauI GCSGC 1 cut(s) 827
TfiI GAWTC 6 cut(s) 275, 580, 694, 748, 929, 1040
Tru1I TTAA 4 cut(s) 426, 450, 830, 936
Tru9I TTAA 4 cut(s) 426, 450, 830, 936
TscAI CASTG 2 cut(s) 235, 658
TseFI GTSAC 2 cut(s) 611, 1180
TseI GCWGC 3 cut(s) 109, 188, 794
Tsp45I GTSAC 2 cut(s) 611, 1180
TspRI CASTG 2 cut(s) 235, 658
VneI GTGCAC 1 cut(s) 482
VpaK11BI GGWCC 2 cut(s) 1073, 1191
XapI RAATTY 5 cut(s) 420, 625, 770, 1026, 1052
XceI RCATGY 2 cut(s) 685, 881
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 2 cut(s) 341, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.