Rorug02G0238800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000330
Physical Location & Seq
Forward (+)
24186691 .. 24187149
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0238800.1

Sequence Viewer

Length: 459 bp
ATGGCAGCACAAACCAACCTTAACATCACCACAGACCGGTATGCTCTTCTTGCTCTCAAAGCCCATATCACCAATGACCCTCGAAACCTAGTCTCCTCCAACTGGTCAACCACAACCCCTGTTTGTAACTGTGTTGGAGTCACTTGTGGTGCACGCCATCATCGAATCGCAGAGTTGAACGTATCTTACTTTGGTCTCACAGGCACCATTCCTCTGGAGCTAGGCAACTTATCTTTTCTTGTTGTTCTGGACTTCAAAAATAATTGTTTTCACGGTATCCTGCCTCAAGAATTGGCCTACCTGCGTCGGTTGAAGTTTATAAGCCTGAGAAACAACAAGTTCATGGGATTCATTCCATCATGGTTTGGCTCCTTATTCAAACTTCAAGTATTCAGTTTGTTTGGTAATCAATTTTCAGGTTCCATACCAGCTACAATCTTCAACTTATCTGCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.93

Weight (kDa)

9.5

Isoelectric Point (pI)

24.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 11 - 49 8.4e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 63 - 136 8.6e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 36, 102
AgeI ACCGGT 1 cut(s) 36
AgsI TTSAA 6 cut(s) 178, 256, 313, 379, 386, 442
AluBI AGCT 2 cut(s) 220, 431
AluI AGCT 2 cut(s) 220, 431
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 97, 200
Alw44I GTGCAC 1 cut(s) 150
AoxI GGCC 1 cut(s) 294
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 19, 61
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 165, 364
BciVI GTATCC 1 cut(s) 287
BcoDI GTCTC 2 cut(s) 97, 200
BfaI CTAG 2 cut(s) 89, 221
BfuAI ACCTGC 1 cut(s) 309
BfuI GTATCC 1 cut(s) 287
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 3 cut(s) 205, 370, 421
BpmI CTGGAG 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 102
Bse118I RCCGGY 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 36, 102
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 36, 102
BsmAI GTCTC 2 cut(s) 97, 200
BsnI GGCC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 154
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 318
BspLI GGNNCC 3 cut(s) 205, 370, 421
BspMI ACCTGC 1 cut(s) 309
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 36
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 131, 275
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 326
BstMAI GTCTC 2 cut(s) 97, 200
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 17
BstXI CCANNNNNNTGG 1 cut(s) 214
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 296
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 36
CseI GACGC 1 cut(s) 293
CspAI ACCGGT 1 cut(s) 36
CviAII CATG 2 cut(s) 343, 360
CviJI RGCY 6 cut(s) 62, 220, 296, 324, 369, 431
CviKI_1 RGCY 6 cut(s) 62, 220, 296, 324, 369, 431
DdeI CTNAG 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 200
FaeI CATG 2 cut(s) 346, 363
FaiI YATR 7 cut(s) 42, 66, 320, 344, 361, 425, 455
FatI CATG 2 cut(s) 342, 359
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 89, 221
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 296
HapII CCGG 1 cut(s) 37
HgaI GACGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 346, 363
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 3 cut(s) 138, 165, 348
HpaII CCGG 1 cut(s) 37
HphI GGTGA 2 cut(s) 19, 61
Hpy166II GTNNAC 2 cut(s) 108, 152
Hpy188III TCNNGA 3 cut(s) 215, 248, 287
Hpy8I GTNNAC 2 cut(s) 108, 152
Hpy99I CGWCG 1 cut(s) 309
HpyCH4III ACNGT 2 cut(s) 131, 275
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 2 cut(s) 346, 363
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 217, 374
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 89, 221
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 125, 139
MboII GAAGA 2 cut(s) 38, 430
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 3 cut(s) 262, 290, 410
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 2 cut(s) 115, 123
MnlI CCTC 4 cut(s) 90, 106, 222, 294
MseI TTAA 1 cut(s) 21
MspI CCGG 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NlaIII CATG 2 cut(s) 346, 363
NlaIV GGNNCC 3 cut(s) 205, 370, 421
NmuCI GTSAC 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PfeI GAWTC 2 cut(s) 165, 348
PinAI ACCGGT 1 cut(s) 36
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PsiI TTATAA 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 205, 370, 421
PsrI GAACNNNNNNTAC 2 cut(s) 170, 202
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 6
SchI GAGTC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 154
SetI ASST 7 cut(s) 21, 90, 183, 222, 303, 421, 433
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 3 cut(s) 262, 290, 410
SspMI CTAG 2 cut(s) 89, 221
TaaI ACNGT 2 cut(s) 131, 275
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 82, 163
TasI AATT 3 cut(s) 262, 290, 410
TfiI GAWTC 2 cut(s) 165, 348
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 331, 340
VneI GTGCAC 1 cut(s) 150
XspI CTAG 2 cut(s) 89, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.