RchiOBHm_Chr2g0142281

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000330
Physical Location & Seq
Forward (+)
59759498 .. 59760482
985 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51245

Sequence Viewer

Length: 582 bp
ATGTATTGGCGATATGCAGATCCATTCTGGAAATTGAAAAGATTTCTCAGCATTGGATCCGAAGCGACACTTAAAAAGAATGTCAGAGTAATTGATGACTTTGTTTACCAACTTATCAGGAGCAAAAGGAAATTGATGACAGGGGAAAACTACGTTAATGAAAAGGAGGATCTACTGTCGAGGTTCCTAATGGAAAGCGGAAAGGAGCCAGAGGAAATGACTGATAAGTATCTAAGGGATATAACTCTGAATTTTATGTTTGCTGGCAAAGATTCCAGTGGAACTACACTCTCGTGGTATGCTATGGATGGGAGAGCTGCAGAGACAGATGACATTCTTCCTGATGGATACAGAGTAAGAAAAGGTGATGGAGTGTTCTACATGGCCTATGCCATGGGCAGAATGCCTTATATATGGGGAGAAGATGCTGAGGATTTTCGACCTGAAAGATGGCTCAAAGATGGAATTTTCCAGCCTGAATCTTCTTTCAAATTCGTCTCATTTCATGCTGGTCCTCGGATTTGTATAGGGAAGGACTTTGCTTACCGGCAGATGAAGATACTATCTGGAGAGCTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

193

Amino Acids

22.71

Weight (kDa)

7.72

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 99 7.2e-08 Cytochrome P450
p450 PF00067 105 - 188 5.6e-19 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 198
AclWI GGATC 4 cut(s) 14, 51, 64, 177
AcsI RAATTY 3 cut(s) 250, 465, 491
AgsI TTSAA 2 cut(s) 37, 490
AleI CACNNNNGTG 1 cut(s) 292
AluBI AGCT 2 cut(s) 317, 574
AluI AGCT 2 cut(s) 317, 574
Alw26I GTCTC 2 cut(s) 317, 502
AlwI GGATC 4 cut(s) 14, 51, 64, 177
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 3 cut(s) 250, 465, 491
AspS9I GGNCC 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 377
AvaII GGWCC 1 cut(s) 512
BamHI GGATCC 1 cut(s) 56
BauI CACGAG 1 cut(s) 292
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 304
BccI CCATC 5 cut(s) 302, 338, 362, 444, 455
BciVI GTATCC 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 317, 502
BfmI CTRYAG 1 cut(s) 318
BfuI GTATCC 1 cut(s) 341
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme18I GGWCC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 3 cut(s) 58, 185, 207
BmsI GCATC 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 393, 515
Bse118I RCCGGY 1 cut(s) 546
Bse1I ACTGG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 393, 515
BseGI GGATG 1 cut(s) 313
BseJI GATNNNNATC 1 cut(s) 228
BseMII CTCAG 2 cut(s) 61, 420
BseNI ACTGG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 304
BshFI GGCC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 547
BsmAI GTCTC 2 cut(s) 317, 502
BsmBI CGTCTC 1 cut(s) 502
BsmI GAATGC 1 cut(s) 408
BsnI GGCC 1 cut(s) 386
Bsp143I GATC 3 cut(s) 19, 56, 169
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 2 cut(s) 60, 421
BspLI GGNNCC 3 cut(s) 58, 185, 207
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 4 cut(s) 14, 51, 64, 177
BsrFI RCCGGY 1 cut(s) 546
BsrI ACTGG 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 546
BssECI CCNNGG 2 cut(s) 393, 515
BssMI GATC 3 cut(s) 19, 56, 169
BssSI CACGAG 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 393
Bst2BI CACGAG 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 4 cut(s) 47, 233, 429, 575
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 3 cut(s) 22, 59, 172
BstMAI GTCTC 2 cut(s) 317, 502
BstMBI GATC 3 cut(s) 19, 56, 169
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 3 cut(s) 19, 56, 169
BstYI RGATCY 3 cut(s) 19, 56, 169
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 1 cut(s) 386
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 546
Cfr13I GGNCC 1 cut(s) 512
CviAII CATG 3 cut(s) 382, 394, 506
CviJI RGCY 6 cut(s) 208, 317, 386, 454, 475, 574
CviKI_1 RGCY 6 cut(s) 208, 317, 386, 454, 475, 574
DdeI CTNAG 4 cut(s) 47, 233, 429, 575
DpnI GATC 3 cut(s) 21, 58, 171
DpnII GATC 3 cut(s) 19, 56, 169
Eco130I CCWWGG 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 512
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 502
FaeI CATG 3 cut(s) 385, 397, 509
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FatI CATG 3 cut(s) 381, 393, 505
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 318
HaeIII GGCC 1 cut(s) 386
HapII CCGG 1 cut(s) 547
Hin1II CATG 3 cut(s) 385, 397, 509
HinfI GANTC 2 cut(s) 272, 479
HpaII CCGG 1 cut(s) 547
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 4 cut(s) 61, 86, 249, 519
Hpy188III TCNNGA 4 cut(s) 28, 118, 341, 567
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 526
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 17, 320
HpyF3I CTNAG 4 cut(s) 47, 233, 429, 575
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 3 cut(s) 385, 397, 509
Kzo9I GATC 3 cut(s) 19, 56, 169
LmnI GCTCC 2 cut(s) 120, 205
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 415
MaeII ACGT 1 cut(s) 153
MalI GATC 3 cut(s) 21, 58, 171
MboI GATC 3 cut(s) 19, 56, 169
MboII GAAGA 4 cut(s) 329, 434, 474, 568
MflI RGATCY 3 cut(s) 19, 56, 169
MluCI AATT 6 cut(s) 32, 90, 131, 250, 465, 491
MnlI CCTC 5 cut(s) 160, 174, 205, 424, 525
MseI TTAA 2 cut(s) 72, 156
MslI CAYNNNNRTG 1 cut(s) 292
MspI CCGG 1 cut(s) 547
Mva1269I GAATGC 1 cut(s) 408
NcoI CCATGG 1 cut(s) 393
NdeII GATC 3 cut(s) 19, 56, 169
NlaIII CATG 3 cut(s) 385, 397, 509
NlaIV GGNNCC 3 cut(s) 58, 185, 207
OliI CACNNNNGTG 1 cut(s) 292
PctI GAATGC 1 cut(s) 408
PfeI GAWTC 2 cut(s) 272, 479
PkrI GCNGC 1 cut(s) 319
PspN4I GGNNCC 3 cut(s) 58, 185, 207
PspPI GGNCC 1 cut(s) 512
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 3 cut(s) 19, 56, 169
RseI CAYNNNNRTG 1 cut(s) 292
SaqAI TTAA 2 cut(s) 72, 156
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 3 cut(s) 19, 56, 169
Sau96I GGNCC 1 cut(s) 512
SetI ASST 6 cut(s) 156, 185, 319, 367, 445, 576
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 292
Sse9I AATT 6 cut(s) 32, 90, 131, 250, 465, 491
SsiI CCGC 1 cut(s) 198
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 177
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 179, 439
TasI AATT 6 cut(s) 32, 90, 131, 250, 465, 491
TfiI GAWTC 2 cut(s) 272, 479
Tru1I TTAA 2 cut(s) 72, 156
Tru9I TTAA 2 cut(s) 72, 156
TscAI CASTG 1 cut(s) 283
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 174, 494, 569
TspRI CASTG 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 512
XapI RAATTY 3 cut(s) 250, 465, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.