Rroxscaffold_4G00304230

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000330
Physical Location & Seq
Forward (+)
24934063 .. 24934682
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00304230.1

Sequence Viewer

Length: 402 bp
ATGCCCAACTCACCGGCTTCTTGCTCTAAACAGCAGCGCAGTATACCTCGAAACATTGAGCATTTTCTCAAGACCAACTTTGCTCAATACTCGAAAAGTGACTATAACCAATGTATTATGTCTGAGATTTTGGGACAGGGCATTTTTGTTGTTAATGGAGAGAAATGGAGGCAGCAGAGGAAGCTTGCTAGCTTTGAGTTCTCAACAAGGAATCTTGTCAGAGTTGTTTTTGAACTTTTGGATTCCAAACGGGTCTTTGATATGCAGTTGAAAAGATCTCTCAATATTGGTTCTGAGGCCACTCTTAAACAGTATGTCATAGTCGCCCATGATTTTGTGTACCAACTTATCAGGAGAAAGAGGGAACTTCTAGCTGGTATTATCAAGGTTTATGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

133

Amino Acids

15.53

Weight (kDa)

10.01

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 43
AfaI GTAC 1 cut(s) 341
AgsI TTSAA 2 cut(s) 233, 271
AluBI AGCT 3 cut(s) 184, 192, 374
AluI AGCT 3 cut(s) 184, 192, 374
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 34, 172
AspLEI GCGC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 3
AsuNHI GCTAGC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 46, 184
BfaI CTAG 2 cut(s) 189, 371
BglII AGATCT 1 cut(s) 275
BisI GCNGC 2 cut(s) 35, 173
BlsI GCNGC 2 cut(s) 36, 174
BmtI GCTAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 13
BseMII CTCAG 2 cut(s) 114, 285
BseXI GCAGC 2 cut(s) 46, 184
BshFI GGCC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 147
BsnI GGCC 1 cut(s) 299
Bsp143I GATC 1 cut(s) 275
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 2 cut(s) 115, 286
BspOI GCTAGC 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssMI GATC 1 cut(s) 275
BssNAI GTATAC 1 cut(s) 44
Bst1107I GTATAC 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 186, 190
BstDEI CTNAG 2 cut(s) 123, 294
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 1 cut(s) 278
BstMBI GATC 1 cut(s) 275
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 46, 184
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BstZ17I GTATAC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 299
Cac8I GCNNGC 2 cut(s) 186, 190
CfoI GCGC 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 13
Csp6I GTAC 1 cut(s) 340
CviAII CATG 1 cut(s) 329
CviJI RGCY 5 cut(s) 17, 184, 192, 299, 374
CviKI_1 RGCY 5 cut(s) 17, 184, 192, 299, 374
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 123, 294
DpnI GATC 1 cut(s) 277
DpnII GATC 1 cut(s) 275
FaeI CATG 1 cut(s) 332
FaiI YATR 8 cut(s) 44, 105, 119, 263, 315, 320, 330, 393
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 147
FatI CATG 1 cut(s) 328
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 35, 173
Fsp4HI GCNGC 2 cut(s) 35, 173
FspBI CTAG 2 cut(s) 189, 371
GlaI GCGC 1 cut(s) 38
GluI GCNGC 2 cut(s) 35, 173
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 332
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 211, 242
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 2 cut(s) 44, 340
Hpy188I TCNGA 3 cut(s) 124, 221, 295
Hpy188III TCNNGA 2 cut(s) 70, 352
Hpy8I GTNNAC 2 cut(s) 44, 340
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 2 cut(s) 123, 294
Hsp92II CATG 1 cut(s) 332
HspAI GCGC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 275
LpnPI CCDG 4 cut(s) 27, 122, 337, 360
Lsp1109I GCAGC 2 cut(s) 46, 184
MaeI CTAG 2 cut(s) 189, 371
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 277
MboI GATC 1 cut(s) 275
MflI RGATCY 1 cut(s) 275
MnlI CCTC 5 cut(s) 57, 162, 171, 289, 354
MseI TTAA 2 cut(s) 153, 306
MspI CCGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 1 cut(s) 275
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 1 cut(s) 332
NmuCI GTSAC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 211, 242
PkrI GCNGC 2 cut(s) 36, 174
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SaqAI TTAA 2 cut(s) 153, 306
SatI GCNGC 2 cut(s) 35, 173
Sau3AI GATC 1 cut(s) 275
SetI ASST 5 cut(s) 49, 186, 194, 376, 390
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 189, 371
TaaI ACNGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 49, 92
TfiI GAWTC 2 cut(s) 211, 242
Tru1I TTAA 2 cut(s) 153, 306
Tru9I TTAA 2 cut(s) 153, 306
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 2 cut(s) 34, 172
Tsp45I GTSAC 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 2 cut(s) 189, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.