Rorug01G0075700

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000330
Physical Location & Seq
Forward (+)
12313232 .. 12314059
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0075700.1

Sequence Viewer

Length: 741 bp
ATGGCCAAACAGGTATGGCAAAGTTTTGATATCCCTGTAAATATGATGAACACCTTTAATTTAAATTGGGAGGAATGGATTTTAGCTAACTTGATGCAAAAAGGTTACTACAAGGAAAATTTGAGCTGGAACATATTCTTCATTTTCTGCTGCTGGTTTTTGTGGAAATGGAGGTGTAAAAGAGTTTTCAATGTGAATTTTTGTTATCCTCATAATCCTCCTGAGATTGTTTTTAGCTATGCTGCTGAATGGTTTAAGGCTACTATTAAGCCTAATGTGAACATGAATTGTCATGTTGAAATGCTTTCTTGGATTAAACCTGCTATTGGAAACCATAAACTTAATGTGGATGGCTCAAGAGCAAACAATGGCTCAATTGGAGCAGGTGATATTATAAGAGATGATTCGGGTTGCTGGTGTGGTGGTTTTATGGTCAAGATTGGTACTGGTGAAGTTCTACAAGCTGAAGCTCTCATCCACAGTGACAATGTTGGCTTACATCCGTTGGGGACTTTGATCATGAACTGCATAAACCTCTTGAAAGGCTTTGACTTTATTCAGATTAAGCATGTTCATCGTGAACGTAATATGGTTGCTCATTTATTAGCCAAGAATAGTACTTTGCATGCCAAAGGAGTCTGCATTTTTCATCATCCTCCTGCGTTGGTGACTGAAGACCTTTTAGATGATATTGTGGGAGCTCCTAGAGCTAGAAGATTTAATGCCAGCAGTGCTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

246

Amino Acids

28.05

Weight (kDa)

8.36

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 395
AarI CACCTGC 1 cut(s) 374
Acc36I ACCTGC 2 cut(s) 328, 374
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 118, 196
AcuI CTGAAG 2 cut(s) 486, 693
AfaI GTAC 2 cut(s) 445, 619
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 3 cut(s) 190, 299, 541
AluBI AGCT 7 cut(s) 86, 126, 237, 464, 470, 701, 710
AluI AGCT 7 cut(s) 86, 126, 237, 464, 470, 701, 710
Alw21I GWGCWC 1 cut(s) 703
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 150, 242
ApoI RAATTY 2 cut(s) 118, 196
Asp700I GAANNNNTTC 1 cut(s) 134
AsuHPI GGTGA 3 cut(s) 398, 461, 679
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 703
BbvI GCAGC 2 cut(s) 137, 229
BccI CCATC 1 cut(s) 344
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BclI TGATCA 1 cut(s) 516
BfaI CTAG 3 cut(s) 705, 711, 739
BfuAI ACCTGC 2 cut(s) 328, 374
BisI GCNGC 2 cut(s) 151, 243
BlsI GCNGC 2 cut(s) 152, 244
BmcAI AGTACT 1 cut(s) 619
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 681
BpuEI CTTGAG 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 451
BseGI GGATG 4 cut(s) 355, 474, 499, 652
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 451
BseXI GCAGC 2 cut(s) 137, 229
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 703
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 523
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 703
Bsp143I GATC 1 cut(s) 516
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 214
BspHI TCATGA 1 cut(s) 519
BspMI ACCTGC 2 cut(s) 328, 374
BsrI ACTGG 1 cut(s) 451
BssMI GATC 1 cut(s) 516
Bst4CI ACNGT 1 cut(s) 482
BstC8I GCNNGC 3 cut(s) 627, 727, 736
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 4 cut(s) 355, 474, 499, 652
BstKTI GATC 1 cut(s) 519
BstMBI GATC 1 cut(s) 516
BstMWI GCNNNNNNNGC 3 cut(s) 707, 731, 735
BstNSI RCATGY 2 cut(s) 572, 629
BstV1I GCAGC 2 cut(s) 137, 229
BstV2I GAAGAC 1 cut(s) 681
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 4 cut(s) 355, 474, 499, 652
BtsI GCAGTG 1 cut(s) 736
BtsIMutI CAGTG 2 cut(s) 487, 736
BveI ACCTGC 2 cut(s) 328, 374
Cac8I GCNNGC 3 cut(s) 627, 727, 736
CciI TCATGA 1 cut(s) 519
Csp6I GTAC 2 cut(s) 444, 618
CviAII CATG 5 cut(s) 283, 293, 520, 569, 626
CviQI GTAC 2 cut(s) 444, 618
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 518
DpnII GATC 1 cut(s) 516
DraI TTTAAA 1 cut(s) 63
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 701
Eco24I GRGCYC 1 cut(s) 703
Eco32I GATATC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 701
Eco57I CTGAAG 2 cut(s) 486, 693
EcoICRI GAGCTC 1 cut(s) 701
EcoRV GATATC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 703
FaeI CATG 5 cut(s) 286, 296, 523, 572, 629
FaqI GGGAC 1 cut(s) 523
FatI CATG 5 cut(s) 282, 292, 519, 568, 625
FbaI TGATCA 1 cut(s) 516
Fnu4HI GCNGC 2 cut(s) 151, 243
FokI GGATG 4 cut(s) 362, 461, 486, 639
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 2 cut(s) 151, 243
FspBI CTAG 3 cut(s) 705, 711, 739
GluI GCNGC 2 cut(s) 151, 243
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 5 cut(s) 286, 296, 523, 572, 629
HinfI GANTC 2 cut(s) 404, 636
HphI GGTGA 3 cut(s) 398, 461, 679
Hpy166II GTNNAC 2 cut(s) 280, 581
Hpy188I TCNGA 1 cut(s) 561
Hpy188III TCNNGA 6 cut(s) 221, 357, 436, 520, 538, 578
Hpy8I GTNNAC 2 cut(s) 280, 581
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 1 cut(s) 583
HpyCH4V TGCA 4 cut(s) 97, 528, 625, 642
HpyF10VI GCNNNNNNNGC 3 cut(s) 707, 731, 735
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 583
Hsp92II CATG 5 cut(s) 286, 296, 523, 572, 629
Ksp22I TGATCA 1 cut(s) 516
Kzo9I GATC 1 cut(s) 516
LmnI GCTCC 3 cut(s) 380, 698, 706
Lsp1109I GCAGC 2 cut(s) 137, 229
LweI GCATC 1 cut(s) 84
MaeI CTAG 3 cut(s) 705, 711, 739
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 3 cut(s) 104, 482, 667
MalI GATC 1 cut(s) 518
MboI GATC 1 cut(s) 516
MboII GAAGA 3 cut(s) 130, 686, 726
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 703
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 58, 64, 118, 196, 286, 375
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 645
MnlI CCTC 6 cut(s) 64, 165, 219, 228, 545, 666
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 134
MscI TGGCCA 1 cut(s) 5
MseI TTAA 8 cut(s) 57, 62, 255, 267, 315, 342, 564, 720
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 1 cut(s) 375
MwoI GCNNNNNNNGC 3 cut(s) 707, 731, 735
NdeII GATC 1 cut(s) 516
NlaIII CATG 5 cut(s) 286, 296, 523, 572, 629
NmuCI GTSAC 2 cut(s) 482, 667
NspI RCATGY 2 cut(s) 572, 629
PaeI GCATGC 1 cut(s) 629
PagI TCATGA 1 cut(s) 519
PaqCI CACCTGC 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 404
PkrI GCNGC 2 cut(s) 152, 244
PleI GAGTC 1 cut(s) 644
PpsI GAGTC 1 cut(s) 644
PsiI TTATAA 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 703
RsaI GTAC 2 cut(s) 445, 619
RsaNI GTAC 2 cut(s) 444, 618
SacI GAGCTC 1 cut(s) 703
SaqAI TTAA 8 cut(s) 57, 62, 255, 267, 315, 342, 564, 720
SatI GCNGC 2 cut(s) 151, 243
Sau3AI GATC 1 cut(s) 516
ScaI AGTACT 1 cut(s) 619
SchI GAGTC 1 cut(s) 645
SduI GDGCHC 1 cut(s) 703
SfaNI GCATC 1 cut(s) 84
SmiI ATTTAAAT 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
SphI GCATGC 1 cut(s) 629
Sse9I AATT 6 cut(s) 58, 64, 118, 196, 286, 375
SspMI CTAG 3 cut(s) 705, 711, 739
SstI GAGCTC 1 cut(s) 703
SwaI ATTTAAAT 1 cut(s) 63
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 1 cut(s) 586
TasI AATT 6 cut(s) 58, 64, 118, 196, 286, 375
TatI WGTACW 1 cut(s) 617
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 8 cut(s) 57, 62, 255, 267, 315, 342, 564, 720
Tru9I TTAA 8 cut(s) 57, 62, 255, 267, 315, 342, 564, 720
TscAI CASTG 2 cut(s) 487, 736
TseFI GTSAC 2 cut(s) 482, 667
TseI GCWGC 2 cut(s) 150, 242
Tsp45I GTSAC 2 cut(s) 482, 667
TspDTI ATGAA 6 cut(s) 62, 130, 299, 536, 563, 638
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 2 cut(s) 487, 736
XapI RAATTY 2 cut(s) 118, 196
XceI RCATGY 2 cut(s) 572, 629
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 3 cut(s) 705, 711, 739
ZrmI AGTACT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.