RLG00000028439

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000330
Physical Location & Seq
Forward (+)
22900489 .. 22902855
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028439

Sequence Viewer

Length: 1182 bp
ATGACTATCACACCCGAGTTGCGAGAGAATGCCCAACTCACCGGCTTCTTGCTCGAAGCAGCAGCGCAGTATACACGTGACCATCGAAACATTGAGCATTTTCTCAAGACCAACTTTGCTCATTACTTGAAAAATGACTATAACCAATGTATTATGTCTGAGATTTTGGGACAGGGCATTTTTGTTGTTAATGGAGAGAAATGGAGGCAGCAGAGGAACCTTGCTAGCTTTGAGTTCTCAACAAGGAATCTTGTTAGAGTTGTTTTTGAGTTTTGGATTCCAAAAGGATGCTCTGATCCATTCTGGAAGTTGAAAAGATTCCTCAATATTGGTTCTGCGGCCACTTTTAAACAGTATGTCAAAGTCGCCCATGATTTTGTGCACCAACTTATCAGGAGAAAGAAGGAACTTCTAGCTGGCAAGAAAGATGGTAAGGATCCAGAGCAAATGAATGACAAATATCCAGGTGATATAATTCTGAATTTTATGATAGCTGGCAAAGATACAATTGCACAAGAAGTGAAGGATGTTGTCTGTATGAAACACGATGCTGACATTGATGAATTTGTGACGAACATAACTGATGCAACTCTTGAAAAGATGCAGTATCTTCATGCCACACTAACAGAGACCTTGAGGCTCTACCCTGCAGTTCCTGTGAATGGGAGGTTTGCACAGATAGATGACATTCTTCCTGATGGCTTTAGAGTGAAAAAAGGAGACAGAATAGCTTACATGGCCTATGCCATGGGGAGAATGCCTTACATTTGGGGAGAAGATGCTGAGGATTTCCGACCTGGAAGATGGCTCGATAATGGAGTTTTCAAGCCCGAATCACCTTTCAAATTCATTTCATCAGGACCTCGGACCTGTCTAGGGAAGGACTTTGCTTACAGGCAGATTAAGATAGTAGCAATGGCTCTTCTTTGCTTCTTCCGCTTCAAATTGGCTGATGAAACAAGAAATTTGGCGTTTCCTTATTGCAAATTTGATGCAGCTGATAACATGGAATGGAATGGAATGGACTTGTTAATAATTTTGTTTGTGTTGCCTCACTGCGGAGCAAATTATCTCATGACCAAACCATGTTCACTCAGGATGGCACGCAGCAACATGGGGATGCTCACCAAGTCTCCATCTAGCTCCAACTCCCTGTTTGAGTTTGATATTAATTCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

394

Amino Acids

45.3

Weight (kDa)

8.48

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 148 - 320 3.7e-29 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 71
AciI CCGC 3 cut(s) 338, 937, 1059
AclWI GGATC 3 cut(s) 290, 431, 444
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 5 cut(s) 481, 563, 845, 964, 986
AcvI CACGTG 1 cut(s) 77
AfiI CCNNNNNNNGG 3 cut(s) 662, 876, 1058
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 6 cut(s) 130, 313, 596, 826, 844, 943
AjnI CCWGG 2 cut(s) 463, 796
AluBI AGCT 6 cut(s) 228, 416, 494, 731, 998, 1143
AluI AGCT 6 cut(s) 228, 416, 494, 731, 998, 1143
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 3 cut(s) 623, 714, 1137
Alw44I GTGCAC 1 cut(s) 380
AlwI GGATC 3 cut(s) 290, 431, 444
AlwNI CAGNNNCTG 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 339, 738
ApaLI GTGCAC 1 cut(s) 380
ApeKI GCWGC 5 cut(s) 59, 62, 208, 995, 1107
ApoI RAATTY 5 cut(s) 481, 563, 845, 964, 986
AseI ATTAAT 1 cut(s) 1170
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 860, 867
AsuHPI GGTGA 4 cut(s) 31, 479, 828, 1117
AsuNHI GCTAGC 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 14
AvaII GGWCC 2 cut(s) 860, 867
BaeGI GKGCMC 1 cut(s) 384
BamHI GGATCC 1 cut(s) 436
BbrPI CACGTG 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 384
BbvCI CCTCAGC 1 cut(s) 783
BbvI GCAGC 5 cut(s) 71, 74, 220, 1007, 1119
BccI CCATC 6 cut(s) 90, 422, 692, 798, 1093, 1144
BciT130I CCWGG 2 cut(s) 465, 798
BcoDI GTCTC 3 cut(s) 623, 714, 1137
BfaI CTAG 5 cut(s) 225, 413, 875, 1140, 1180
BfmI CTRYAG 1 cut(s) 648
BisI GCNGC 6 cut(s) 60, 63, 209, 339, 996, 1108
BlsI GCNGC 6 cut(s) 61, 64, 210, 340, 997, 1109
Bme1390I CCNGG 2 cut(s) 465, 798
Bme18I GGWCC 2 cut(s) 860, 867
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 2 cut(s) 860, 867
BmiI GGNNCC 2 cut(s) 218, 438
BmrFI CCNGG 2 cut(s) 465, 798
BmsI GCATC 7 cut(s) 278, 538, 574, 591, 769, 982, 1110
BmtI GCTAGC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 783
BpuEI CTTGAG 2 cut(s) 89, 655
BsaAI YACGTR 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 747, 863
BsaXI ACNNNNNCTCC 2 cut(s) 1117, 1147
Bsc4I CCNNNNNNNGG 3 cut(s) 662, 876, 1058
Bse118I RCCGGY 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 921
BseBI CCWGG 2 cut(s) 465, 798
BseDI CCNNGG 2 cut(s) 747, 863
BseGI GGATG 4 cut(s) 293, 532, 1104, 1125
BseLI CCNNNNNNNGG 3 cut(s) 662, 876, 1058
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 3 cut(s) 150, 774, 1108
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 5 cut(s) 71, 74, 220, 1007, 1119
BshFI GGCC 2 cut(s) 341, 740
BsiHKAI GWGCWC 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 662, 876, 1058
BsmAI GTCTC 3 cut(s) 623, 714, 1137
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 2 cut(s) 34, 762
BsnI GGCC 2 cut(s) 341, 740
Bso31I GGTCTC 1 cut(s) 623
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 2 cut(s) 295, 436
Bsp19I CCATGG 1 cut(s) 747
BspACI CCGC 3 cut(s) 338, 937, 1059
BspANI GGCC 2 cut(s) 341, 740
BspCNI CTCAG 3 cut(s) 151, 775, 1107
BspHI TCATGA 1 cut(s) 1074
BspLI GGNNCC 2 cut(s) 218, 438
BspMAI CTGCAG 1 cut(s) 652
BspOI GCTAGC 1 cut(s) 228
BspPI GGATC 3 cut(s) 290, 431, 444
BspQI GCTCTTC 1 cut(s) 927
BspTNI GGTCTC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 921
BsrFI RCCGGY 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 747, 863
BssMI GATC 2 cut(s) 295, 436
BssNAI GTATAC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 747
Bst1107I GTATAC 1 cut(s) 72
Bst2UI CCWGG 2 cut(s) 465, 798
Bst4CI ACNGT 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 927
BstBAI YACGTR 1 cut(s) 77
BstC8I GCNNGC 4 cut(s) 226, 418, 496, 1105
BstDEI CTNAG 3 cut(s) 159, 783, 1094
BstDSI CCRYGG 1 cut(s) 747
BstF5I GGATG 4 cut(s) 293, 532, 1104, 1125
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 2 cut(s) 298, 439
BstMAI GTCTC 3 cut(s) 623, 714, 1137
BstMBI GATC 2 cut(s) 295, 436
BstMWI GCNNNNNNNGC 2 cut(s) 737, 936
BstNI CCWGG 2 cut(s) 465, 798
BstSCI CCNGG 2 cut(s) 463, 796
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 1 cut(s) 384
BstV1I GCAGC 5 cut(s) 71, 74, 220, 1007, 1119
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BstZ17I GTATAC 1 cut(s) 72
BsuRI GGCC 2 cut(s) 341, 740
BtgI CCRYGG 1 cut(s) 747
BtsCI GGATG 4 cut(s) 293, 532, 1104, 1125
BtsI GCAGTG 1 cut(s) 1054
BtsIMutI CAGTG 1 cut(s) 1054
Cac8I GCNNGC 4 cut(s) 226, 418, 496, 1105
CaiI CAGNNNCTG 1 cut(s) 656
CciI TCATGA 1 cut(s) 1074
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 860, 867
CviAII CATG 8 cut(s) 371, 614, 736, 748, 1006, 1075, 1086, 1114
DdeI CTNAG 3 cut(s) 159, 783, 1094
DpnI GATC 2 cut(s) 297, 438
DpnII GATC 2 cut(s) 295, 436
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 927
EarI CTCTTC 1 cut(s) 927
Eco130I CCWWGG 1 cut(s) 747
Eco31I GGTCTC 1 cut(s) 623
Eco47I GGWCC 2 cut(s) 860, 867
Eco72I CACGTG 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 860
EcoRII CCWGG 2 cut(s) 463, 796
EcoT14I CCWWGG 1 cut(s) 747
ErhI CCWWGG 1 cut(s) 747
FaeI CATG 8 cut(s) 374, 617, 739, 751, 1009, 1078, 1089, 1117
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FaqI GGGAC 1 cut(s) 183
FatI CATG 8 cut(s) 370, 613, 735, 747, 1005, 1074, 1085, 1113
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 6 cut(s) 60, 63, 209, 339, 996, 1108
FokI GGATG 4 cut(s) 300, 539, 1111, 1132
Fsp4HI GCNGC 6 cut(s) 60, 63, 209, 339, 996, 1108
FspBI CTAG 5 cut(s) 225, 413, 875, 1140, 1180
GlaI GCGC 1 cut(s) 66
GluI GCNGC 6 cut(s) 60, 63, 209, 339, 996, 1108
HaeIII GGCC 2 cut(s) 341, 740
HapII CCGG 1 cut(s) 42
HhaI GCGC 1 cut(s) 67
Hin1II CATG 8 cut(s) 374, 617, 739, 751, 1009, 1078, 1089, 1117
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 4 cut(s) 247, 277, 318, 833
HpaII CCGG 1 cut(s) 42
HphI GGTGA 4 cut(s) 31, 479, 828, 1117
Hpy166II GTNNAC 3 cut(s) 72, 382, 1091
Hpy188I TCNGA 5 cut(s) 160, 295, 480, 794, 867
Hpy188III TCNNGA 9 cut(s) 106, 304, 394, 440, 593, 695, 858, 1075, 1096
Hpy8I GTNNAC 3 cut(s) 72, 382, 1091
HpyAV CCTTC 3 cut(s) 397, 517, 874
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 8 cut(s) 382, 512, 587, 604, 650, 674, 984, 995
HpyF10VI GCNNNNNNNGC 2 cut(s) 737, 936
HpyF3I CTNAG 3 cut(s) 159, 783, 1094
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 8 cut(s) 374, 617, 739, 751, 1009, 1078, 1089, 1117
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 295, 436
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 2 cut(s) 1061, 1148
Lsp1109I GCAGC 5 cut(s) 71, 74, 220, 1007, 1119
LweI GCATC 7 cut(s) 278, 538, 574, 591, 769, 982, 1110
MaeI CTAG 5 cut(s) 225, 413, 875, 1140, 1180
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 2 cut(s) 77, 568
MalI GATC 2 cut(s) 297, 438
MboI GATC 2 cut(s) 295, 436
MboII GAAGA 6 cut(s) 602, 683, 788, 813, 914, 925
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 384
MmeI TCCRAC 2 cut(s) 817, 1170
MnlI CCTC 8 cut(s) 198, 207, 332, 630, 660, 778, 873, 1062
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 5 cut(s) 189, 348, 903, 1031, 1170
MslI CAYNNNNRTG 1 cut(s) 1118
MspA1I CMGCKG 1 cut(s) 998
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 2 cut(s) 465, 798
MunI CAATTG 1 cut(s) 507
Mva1269I GAATGC 2 cut(s) 34, 762
MvaI CCWGG 2 cut(s) 465, 798
MwoI GCNNNNNNNGC 2 cut(s) 737, 936
NcoI CCATGG 1 cut(s) 747
NdeII GATC 2 cut(s) 295, 436
NheI GCTAGC 1 cut(s) 224
NlaIII CATG 8 cut(s) 374, 617, 739, 751, 1009, 1078, 1089, 1117
NlaIV GGNNCC 2 cut(s) 218, 438
NmuCI GTSAC 2 cut(s) 77, 568
PagI TCATGA 1 cut(s) 1074
PciSI GCTCTTC 1 cut(s) 927
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 2 cut(s) 34, 762
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 4 cut(s) 247, 277, 318, 833
PkrI GCNGC 6 cut(s) 61, 64, 210, 340, 997, 1109
PmaCI CACGTG 1 cut(s) 77
PmlI CACGTG 1 cut(s) 77
Ppu21I YACGTR 1 cut(s) 77
PpuMI RGGWCCY 1 cut(s) 860
PshBI ATTAAT 1 cut(s) 1170
Psp5II RGGWCCY 1 cut(s) 860
Psp6I CCWGG 2 cut(s) 463, 796
PspCI CACGTG 1 cut(s) 77
PspGI CCWGG 2 cut(s) 463, 796
PspN4I GGNNCC 2 cut(s) 218, 438
PspPI GGNCC 2 cut(s) 860, 867
PspPPI RGGWCCY 1 cut(s) 860
PstI CTGCAG 1 cut(s) 652
PstNI CAGNNNCTG 1 cut(s) 656
PsuI RGATCY 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 998
RseI CAYNNNNRTG 1 cut(s) 1118
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 5 cut(s) 189, 348, 903, 1031, 1170
SatI GCNGC 6 cut(s) 60, 63, 209, 339, 996, 1108
Sau3AI GATC 2 cut(s) 295, 436
Sau96I GGNCC 2 cut(s) 860, 867
ScrFI CCNGG 2 cut(s) 465, 798
SduI GDGCHC 1 cut(s) 384
SfaNI GCATC 7 cut(s) 278, 538, 574, 591, 769, 982, 1110
SfcI CTRYAG 1 cut(s) 648
SinI GGWCC 2 cut(s) 860, 867
SmiMI CAYNNNNRTG 1 cut(s) 1118
SmlI CTYRAG 2 cut(s) 104, 634
SmoI CTYRAG 2 cut(s) 104, 634
SsiI CCGC 3 cut(s) 338, 937, 1059
SspI AATATT 1 cut(s) 328
SspMI CTAG 5 cut(s) 225, 413, 875, 1140, 1180
StyD4I CCNGG 2 cut(s) 463, 796
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 1 cut(s) 354
TaiI ACGT 1 cut(s) 79
TaqI TCGA 3 cut(s) 54, 85, 810
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 4 cut(s) 247, 277, 318, 833
Tru1I TTAA 5 cut(s) 189, 348, 903, 1031, 1170
Tru9I TTAA 5 cut(s) 189, 348, 903, 1031, 1170
TscAI CASTG 1 cut(s) 1061
TseFI GTSAC 2 cut(s) 77, 568
TseI GCWGC 5 cut(s) 59, 62, 208, 995, 1107
Tsp45I GTSAC 2 cut(s) 77, 568
TspDTI ATGAA 7 cut(s) 464, 554, 576, 602, 838, 843, 969
TspRI CASTG 1 cut(s) 1061
VneI GTGCAC 1 cut(s) 380
VpaK11BI GGWCC 2 cut(s) 860, 867
VspI ATTAAT 1 cut(s) 1170
XapI RAATTY 5 cut(s) 481, 563, 845, 964, 986
XmiI GTMKAC 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 5 cut(s) 225, 413, 875, 1140, 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.