Rh1BG200200

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000330
Physical Location & Seq
Forward (+)
31660834 .. 31664150
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG200200.1

Sequence Viewer

Length: 852 bp
ATGGGGTTCCTATACTTCATCTGCACCTTCATATTTTCAGTACTCTCTCTTTTCCTAGCCTTCTTCTCTTTCCTCACACTCAGAATCTTCAGAGGCAAATCCATCGGAGACCCAAACTATGCACCAGTGAAAGGCACACTCTTTCACATGCTCTACTACTACAAAAAACTCTATGACTACCAAACCCGAGTGGCCAGAGGAACCCCAACTCACCGGATTCTGGCTCCGGACCTGAGTTTCATATACACAACCGACTCAAGAAACATCGAACATGTTGTCAATACCAACTTTGCACATTATTCAAAAGGCGTGATAAGTCAGGAAAGCATGTGTGATGTTTTTGGGCAAGGGATATTTAATGTTGATGGAGAAAAGTGGAAACACCAGAGGAAGCTTGCAAGCTATGAGTTCTCAACCAGGGTTCTTAGAGATTTCAGCTGTTCTGTGTTTAGAAGAAGTGCTGCAAAATTGGTGAAAATTATTTTTGAGTTTTCGGATTCAAACGGGATTTTTGATATGCAGGACTTGCTTATGAGGTGTACCATGGATTCCATATTCAAAGTTGGGTTTGGAGTAGAACTAAATTGCTTGGAAGGGTCAAGCAAAGAAGGGATAGAATTCATGAAGGCCTTTGATGAGTCGACTGCTCTAACCTCTTGGCGCTTTGTTGATCCCCTCTGGAAATTGAAAAGATTTCTCAACATTGGTTCTGAGGCCACCCTTAAAAAGTATGTCAAAGTCATACGTGATTTTGTGCACCAACTTATCAAGAGCAAGAGGGAATTGCTAGCTGGCCAGAAACATGGTGTAAGTGAATTTTACATTTTAGAATCTTCACAGAACTTCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

283

Amino Acids

32.79

Weight (kDa)

9.23

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 54 - 268 1.3e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 641
AccIII TCCGGA 1 cut(s) 226
AclWI GGATC 1 cut(s) 665
AcoI YGGCCR 2 cut(s) 192, 793
AcsI RAATTY 2 cut(s) 617, 815
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 2 cut(s) 42, 541
AfiI CCNNNNNNNGG 2 cut(s) 131, 220
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 4 cut(s) 303, 501, 559, 688
AjnI CCWGG 1 cut(s) 416
AluBI AGCT 4 cut(s) 394, 402, 438, 791
AluI AGCT 4 cut(s) 394, 402, 438, 791
Alw21I GWGCWC 1 cut(s) 759
Alw26I GTCTC 1 cut(s) 102
Alw44I GTGCAC 1 cut(s) 755
AlwI GGATC 1 cut(s) 665
Ama87I CYCGRG 1 cut(s) 186
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 4 cut(s) 192, 627, 714, 793
ApaLI GTGCAC 1 cut(s) 755
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 2 cut(s) 617, 815
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AspLEI GCGC 1 cut(s) 663
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 203, 484
AsuNHI GCTAGC 1 cut(s) 787
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 759
BalI TGGCCA 2 cut(s) 194, 795
Bbv12I GWGCWC 1 cut(s) 759
BbvI GCAGC 1 cut(s) 448
BccI CCATC 2 cut(s) 110, 359
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 3 cut(s) 56, 788, 850
BfoI RGCGCY 1 cut(s) 664
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 418
Bme18I GGWCC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 3 cut(s) 8, 202, 225
BmrFI CCNGG 1 cut(s) 418
BmtI GCTAGC 1 cut(s) 791
BpuEI CTTGAG 1 cut(s) 241
BsaAI YACGTR 1 cut(s) 746
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 417, 543
BsaWI WCCGGW 2 cut(s) 213, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 220
Bse1I ACTGG 1 cut(s) 125
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 1 cut(s) 418
BseDI CCNNGG 2 cut(s) 417, 543
BseLI CCNNNNNNNGG 2 cut(s) 131, 220
BseMII CTCAG 3 cut(s) 94, 224, 702
BseNI ACTGG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 759
BseXI GCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 7
BshFI GGCC 4 cut(s) 194, 629, 716, 795
BsiHKAI GWGCWC 1 cut(s) 759
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 2 cut(s) 214, 227
BslI CCNNNNNNNGG 2 cut(s) 131, 220
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 4 cut(s) 194, 629, 716, 795
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 759
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 1 cut(s) 670
Bsp19I CCATGG 1 cut(s) 543
BspANI GGCC 4 cut(s) 194, 629, 716, 795
BspCNI CTCAG 3 cut(s) 93, 225, 703
BspEI TCCGGA 1 cut(s) 226
BspHI TCATGA 1 cut(s) 621
BspLI GGNNCC 3 cut(s) 8, 202, 225
BspOI GCTAGC 1 cut(s) 791
BspPI GGATC 1 cut(s) 665
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 417, 543
BssMI GATC 1 cut(s) 670
BssT1I CCWWGG 1 cut(s) 543
Bst2UI CCWGG 1 cut(s) 418
BstAPI GCANNNNNTGC 1 cut(s) 526
BstBAI YACGTR 1 cut(s) 746
BstC8I GCNNGC 4 cut(s) 396, 400, 789, 793
BstDEI CTNAG 4 cut(s) 80, 233, 425, 711
BstDSI CCRYGG 1 cut(s) 543
BstH2I RGCGCY 1 cut(s) 664
BstHHI GCGC 1 cut(s) 663
BstKTI GATC 1 cut(s) 673
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 1 cut(s) 670
BstMWI GCNNNNNNNGC 1 cut(s) 526
BstNI CCWGG 1 cut(s) 418
BstNSI RCATGY 3 cut(s) 151, 275, 331
BstSCI CCNGG 1 cut(s) 416
BstSLI GKGCMC 1 cut(s) 759
BstV1I GCAGC 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 803
BsuRI GGCC 4 cut(s) 194, 629, 716, 795
BtgI CCRYGG 1 cut(s) 543
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 4 cut(s) 396, 400, 789, 793
CciI TCATGA 1 cut(s) 621
CfoI GCGC 1 cut(s) 663
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 2 cut(s) 41, 540
CviAII CATG 6 cut(s) 148, 272, 328, 544, 622, 803
CviQI GTAC 2 cut(s) 41, 540
DdeI CTNAG 4 cut(s) 80, 233, 425, 711
DpnI GATC 1 cut(s) 672
DpnII GATC 1 cut(s) 670
EaeI YGGCCR 2 cut(s) 192, 793
Eco130I CCWWGG 1 cut(s) 543
Eco147I AGGCCT 1 cut(s) 629
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 617
EcoRII CCWGG 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 543
FaeI CATG 6 cut(s) 151, 275, 331, 547, 625, 806
FatI CATG 6 cut(s) 147, 271, 327, 543, 621, 802
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 1 cut(s) 462
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 3 cut(s) 56, 788, 850
GlaI GCGC 1 cut(s) 662
GluI GCNGC 1 cut(s) 462
HaeII RGCGCY 1 cut(s) 664
HaeIII GGCC 4 cut(s) 194, 629, 716, 795
HapII CCGG 2 cut(s) 214, 227
HhaI GCGC 1 cut(s) 663
Hin1II CATG 6 cut(s) 151, 275, 331, 547, 625, 806
Hin6I GCGC 1 cut(s) 661
HinP1I GCGC 1 cut(s) 661
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 7 cut(s) 84, 217, 254, 497, 548, 638, 830
HpaII CCGG 2 cut(s) 214, 227
HphI GGTGA 2 cut(s) 203, 484
Hpy166II GTNNAC 3 cut(s) 540, 642, 757
Hpy188I TCNGA 5 cut(s) 83, 92, 107, 496, 712
Hpy188III TCNNGA 6 cut(s) 227, 258, 320, 622, 679, 769
Hpy8I GTNNAC 3 cut(s) 540, 642, 757
HpyAV CCTTC 5 cut(s) 37, 70, 587, 602, 619
HpyCH4IV ACGT 1 cut(s) 745
HpyCH4V TGCA 7 cut(s) 24, 122, 293, 398, 464, 520, 757
HpyF10VI GCNNNNNNNGC 1 cut(s) 526
HpyF3I CTNAG 4 cut(s) 80, 233, 425, 711
HpySE526I ACGT 1 cut(s) 745
Hsp92II CATG 6 cut(s) 151, 275, 331, 547, 625, 806
HspAI GCGC 1 cut(s) 661
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 670
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 1 cut(s) 448
MaeI CTAG 3 cut(s) 56, 788, 850
MaeII ACGT 1 cut(s) 745
MalI GATC 1 cut(s) 672
MboI GATC 1 cut(s) 670
MboII GAAGA 4 cut(s) 55, 79, 465, 825
MhlI GDGCHC 1 cut(s) 759
MlsI TGGCCA 2 cut(s) 194, 795
MluCI AATT 7 cut(s) 467, 477, 583, 617, 683, 782, 815
MluNI TGGCCA 2 cut(s) 194, 795
MlyI GAGTC 2 cut(s) 248, 647
MnlI CCTC 9 cut(s) 83, 86, 191, 381, 528, 664, 686, 706, 771
Mox20I TGGCCA 2 cut(s) 194, 795
MroI TCCGGA 1 cut(s) 226
MscI TGGCCA 2 cut(s) 194, 795
MseI TTAA 2 cut(s) 357, 723
Msp20I TGGCCA 2 cut(s) 194, 795
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 2 cut(s) 214, 227
MspR9I CCNGG 1 cut(s) 418
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 1 cut(s) 526
NcoI CCATGG 1 cut(s) 543
NdeII GATC 1 cut(s) 670
NheI GCTAGC 1 cut(s) 787
NlaIII CATG 6 cut(s) 151, 275, 331, 547, 625, 806
NlaIV GGNNCC 3 cut(s) 8, 202, 225
NspI RCATGY 3 cut(s) 151, 275, 331
PagI TCATGA 1 cut(s) 621
PceI AGGCCT 1 cut(s) 629
PciI ACATGT 1 cut(s) 271
PfeI GAWTC 5 cut(s) 84, 217, 497, 548, 830
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 2 cut(s) 248, 646
PpsI GAGTC 2 cut(s) 248, 646
Ppu21I YACGTR 1 cut(s) 746
PscI ACATGT 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 416
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 3 cut(s) 8, 202, 225
PspPI GGNCC 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 438
RsaI GTAC 2 cut(s) 42, 541
RsaNI GTAC 2 cut(s) 41, 540
SalI GTCGAC 1 cut(s) 640
SaqAI TTAA 2 cut(s) 357, 723
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 1 cut(s) 670
Sau96I GGNCC 1 cut(s) 229
ScaI AGTACT 1 cut(s) 42
SchI GAGTC 2 cut(s) 248, 647
ScrFI CCNGG 1 cut(s) 418
SduI GDGCHC 1 cut(s) 759
SetI ASST 9 cut(s) 29, 234, 396, 404, 440, 539, 656, 748, 793
SinI GGWCC 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 7 cut(s) 467, 477, 583, 617, 683, 782, 815
SseBI AGGCCT 1 cut(s) 629
SspMI CTAG 3 cut(s) 56, 788, 850
StuI AGGCCT 1 cut(s) 629
StyD4I CCNGG 1 cut(s) 416
StyI CCWWGG 1 cut(s) 543
TaiI ACGT 1 cut(s) 748
TaqI TCGA 2 cut(s) 267, 641
TasI AATT 7 cut(s) 467, 477, 583, 617, 683, 782, 815
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 5 cut(s) 84, 217, 497, 548, 830
Tru1I TTAA 2 cut(s) 357, 723
Tru9I TTAA 2 cut(s) 357, 723
TscAI CASTG 1 cut(s) 132
TseI GCWGC 1 cut(s) 461
TspDTI ATGAA 5 cut(s) 7, 19, 229, 610, 638
TspRI CASTG 1 cut(s) 132
VneI GTGCAC 1 cut(s) 755
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 2 cut(s) 617, 815
XceI RCATGY 3 cut(s) 151, 275, 331
XmiI GTMKAC 1 cut(s) 641
XspI CTAG 3 cut(s) 56, 788, 850
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.