RchiOBHm_Chr1g0350951

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000330
Physical Location & Seq
Forward (+)
44117381 .. 44119096
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57678

Sequence Viewer

Length: 1182 bp
ATGTTTGGGCAAGGGATATTTGTTGTTGATGGAGAAAAGTGGAGGCAGCAGAGGAAGCTTGCGAGCATAGAGTTTTCGACGAGAATTCTTAGAGACTTTAGCTGCTCTGTGTTTAGAAGAAATGCTGCCAAACTGGTCAGAGCTCTTTCTGAGTTTTCTAGTGACAATGGGTTTTTTGATATGCAAGAATTGTTTATGAGATCTGCCTTAGATTCCATATTCAAAGTTGGGTTTGGAACAGAACTGAATTGCTTCAAAGAAGGCAGTGCATTTATAAATGCATTTGATGAATCAAATGCTCTCATGTATTGGCGATATGCAGATCCATTCTGGAAATTGAAAAGATTTCTCTGCATTGGATCCGAAGCGACACTTAAAAAGAATGTCAGAGTAATTGATGACTTTGTTTACCAACTTATCAGGAGCAAAAGGAAATTGATGACAGGGGAAAACTACGTTAATGAAAAGGAGGATCTACTATCGAGGTTCCTAATGGAAAGCGGAAAGGAGCCAGAGGAAATGACTGATACGTATCTAAGGGATATAACTCTGAATTTTATGTTTGCTGGCAAAGATTCTAGTGGAACTACACTCTCGTGGTTCTTCTACATGCTGTGCAAAAACCCTCTCATTCAAGAAAAGGTTGCACAAGAAGTGAGGGATGTAGTTGGTTTGAACCACAAAGCTGACATCGACAAGTTTGTGGCAAATTTAACTGATGCAGCTCTTGAAAAAATGCATTATCTTCATGCAGCACTGACAGAGACCTTGAGGCTATACCCTGCAGTTCCTGTGGATGGGAGAGCTGCAGAGACAGATGACATTCTTCCTGATGGATACAGAGTAAGAAAAGGTGATGGAGTGTTCTACATGGCCTATGCCATGGGCAGAATGTCTTATATATGGGGAGAAGATGCTGAGGATTTTCGACCTGAAAGATGGCTCAAAAATGGAATTTTCCAGCCTGAATCTTCTTTCAAATTCGTCTCATTTCATGCTGGTCCTCGGATTTGTATAGGGAAGGACTTTGCTTACCGGCAGATGAAGATGGTATCAATGGCACTTCTGTGCTACTTTCGCTTTAAATTGGTGGATGAAACAAAAATCGCAACCTATAGAACCATGTTCACCCTGCACATGGATGGAGGTCTCCCTATGCGCGCAATTTCGAGGACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

393

Amino Acids

45.56

Weight (kDa)

8.37

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 370 2.8e-71 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
AccII CGCG 1 cut(s) 1161
AciI CCGC 1 cut(s) 501
AclWI GGATC 4 cut(s) 317, 354, 367, 480
AcsI RAATTY 5 cut(s) 84, 553, 709, 954, 980
AfiI CCNNNNNNNGG 2 cut(s) 797, 1138
AgsI TTSAA 7 cut(s) 223, 256, 340, 635, 676, 731, 979
AleI CACNNNNGTG 2 cut(s) 595, 1066
AluBI AGCT 6 cut(s) 58, 102, 143, 686, 725, 806
AluI AGCT 6 cut(s) 58, 102, 143, 686, 725, 806
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 5 cut(s) 87, 758, 806, 991, 1154
AlwI GGATC 4 cut(s) 317, 354, 367, 480
AlwNI CAGNNNCTG 1 cut(s) 791
AoxI GGCC 1 cut(s) 873
ApeKI GCWGC 6 cut(s) 46, 102, 125, 722, 752, 806
ApoI RAATTY 5 cut(s) 84, 553, 709, 954, 980
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 2 cut(s) 1161, 1163
AspS9I GGNCC 1 cut(s) 1001
AsuHPI GGTGA 2 cut(s) 866, 1120
AvaII GGWCC 1 cut(s) 1001
BamHI GGATCC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 145
BauI CACGAG 1 cut(s) 595
Bbv12I GWGCWC 1 cut(s) 145
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 6 cut(s) 58, 89, 112, 734, 764, 793
BccI CCATC 7 cut(s) 23, 791, 827, 851, 933, 1042, 1136
BciVI GTATCC 1 cut(s) 830
BcoDI GTCTC 5 cut(s) 87, 758, 806, 991, 1154
BfaI CTAG 2 cut(s) 159, 579
BfmI CTRYAG 3 cut(s) 783, 807, 1114
BfuI GTATCC 1 cut(s) 830
BglII AGATCT 1 cut(s) 200
BisI GCNGC 6 cut(s) 47, 103, 126, 723, 753, 807
BlsI GCNGC 6 cut(s) 48, 104, 127, 724, 754, 808
Bme18I GGWCC 1 cut(s) 1001
BmgT120I GGNCC 1 cut(s) 1001
BmiI GGNNCC 3 cut(s) 361, 488, 510
BmsI GCATC 2 cut(s) 709, 904
Bpu10I CCTNAGC 1 cut(s) 918
BpuEI CTTGAG 1 cut(s) 790
BsaAI YACGTR 1 cut(s) 531
BsaBI GATNNNNATC 1 cut(s) 531
BsaI GGTCTC 2 cut(s) 758, 1154
BsaJI CCNNGG 2 cut(s) 882, 1004
Bsc4I CCNNNNNNNGG 2 cut(s) 797, 1138
Bse118I RCCGGY 1 cut(s) 1035
Bse1I ACTGG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 531
BseDI CCNNGG 2 cut(s) 882, 1004
BseGI GGATG 4 cut(s) 667, 802, 1099, 1147
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 797, 1138
BseMII CTCAG 2 cut(s) 141, 909
BseNI ACTGG 1 cut(s) 138
BsePI GCGCGC 1 cut(s) 1159
BseXI GCAGC 6 cut(s) 58, 89, 112, 734, 764, 793
BsgI GTGCAG 1 cut(s) 1118
Bsh1236I CGCG 1 cut(s) 1161
BshFI GGCC 1 cut(s) 875
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 1036
BslI CCNNNNNNNGG 2 cut(s) 797, 1138
BsmAI GTCTC 5 cut(s) 87, 758, 806, 991, 1154
BsmBI CGTCTC 1 cut(s) 991
BsnI GGCC 1 cut(s) 875
Bso31I GGTCTC 2 cut(s) 758, 1154
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 4 cut(s) 200, 322, 359, 472
Bsp19I CCATGG 1 cut(s) 882
BspACI CCGC 1 cut(s) 501
BspANI GGCC 1 cut(s) 875
BspCNI CTCAG 2 cut(s) 142, 910
BspFNI CGCG 1 cut(s) 1161
BspLI GGNNCC 3 cut(s) 361, 488, 510
BspMAI CTGCAG 2 cut(s) 787, 811
BspPI GGATC 4 cut(s) 317, 354, 367, 480
BspTNI GGTCTC 2 cut(s) 758, 1154
BsrFI RCCGGY 1 cut(s) 1035
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 1035
BssECI CCNNGG 2 cut(s) 882, 1004
BssHII GCGCGC 1 cut(s) 1159
BssMI GATC 4 cut(s) 200, 322, 359, 472
BssSI CACGAG 1 cut(s) 595
BssT1I CCWWGG 1 cut(s) 882
Bst2BI CACGAG 1 cut(s) 595
BstBAI YACGTR 1 cut(s) 531
BstC8I GCNNGC 4 cut(s) 60, 64, 568, 1161
BstDEI CTNAG 5 cut(s) 89, 150, 208, 536, 918
BstDSI CCRYGG 1 cut(s) 882
BstF5I GGATG 4 cut(s) 667, 802, 1099, 1147
BstFNI CGCG 1 cut(s) 1161
BstHHI GCGC 2 cut(s) 1161, 1163
BstKTI GATC 4 cut(s) 203, 325, 362, 475
BstMAI GTCTC 5 cut(s) 87, 758, 806, 991, 1154
BstMBI GATC 4 cut(s) 200, 322, 359, 472
BstMWI GCNNNNNNNGC 2 cut(s) 55, 1077
BstNSI RCATGY 1 cut(s) 613
BstSFI CTRYAG 3 cut(s) 783, 807, 1114
BstSNI TACGTA 1 cut(s) 531
BstUI CGCG 1 cut(s) 1161
BstV1I GCAGC 6 cut(s) 58, 89, 112, 734, 764, 793
BstX2I RGATCY 4 cut(s) 200, 322, 359, 472
BstYI RGATCY 4 cut(s) 200, 322, 359, 472
BsuI GTATCC 1 cut(s) 830
BsuRI GGCC 1 cut(s) 875
BtgI CCRYGG 1 cut(s) 882
BtsCI GGATG 4 cut(s) 667, 802, 1099, 1147
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 271, 755
Cac8I GCNNGC 4 cut(s) 60, 64, 568, 1161
CaiI CAGNNNCTG 1 cut(s) 791
CfoI GCGC 2 cut(s) 1161, 1163
Cfr10I RCCGGY 1 cut(s) 1035
Cfr13I GGNCC 1 cut(s) 1001
CviAII CATG 9 cut(s) 304, 610, 749, 871, 883, 995, 1123, 1138, 1179
DdeI CTNAG 5 cut(s) 89, 150, 208, 536, 918
DpnI GATC 4 cut(s) 202, 324, 361, 474
DpnII GATC 4 cut(s) 200, 322, 359, 472
DraI TTTAAA 1 cut(s) 1084
Ecl136II GAGCTC 1 cut(s) 143
Eco105I TACGTA 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 882
Eco24I GRGCYC 1 cut(s) 145
Eco31I GGTCTC 2 cut(s) 758, 1154
Eco47I GGWCC 1 cut(s) 1001
Eco53kI GAGCTC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 882
EcoT22I ATGCAT 2 cut(s) 283, 741
EcoT38I GRGCYC 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 882
Esp3I CGTCTC 1 cut(s) 991
FaeI CATG 9 cut(s) 307, 613, 752, 874, 886, 998, 1126, 1141, 1182
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 9 cut(s) 303, 609, 748, 870, 882, 994, 1122, 1137, 1178
Fnu4HI GCNGC 6 cut(s) 47, 103, 126, 723, 753, 807
FokI GGATG 4 cut(s) 674, 809, 1106, 1154
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 6 cut(s) 47, 103, 126, 723, 753, 807
FspBI CTAG 2 cut(s) 159, 579
GlaI GCGC 2 cut(s) 1160, 1162
GluI GCNGC 6 cut(s) 47, 103, 126, 723, 753, 807
HaeIII GGCC 1 cut(s) 875
HapII CCGG 1 cut(s) 1036
HhaI GCGC 2 cut(s) 1161, 1163
Hin1II CATG 9 cut(s) 307, 613, 752, 874, 886, 998, 1126, 1141, 1182
Hin6I GCGC 2 cut(s) 1159, 1161
HinP1I GCGC 2 cut(s) 1159, 1161
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 4 cut(s) 212, 290, 575, 968
HpaII CCGG 1 cut(s) 1036
HphI GGTGA 2 cut(s) 866, 1120
Hpy166II GTNNAC 2 cut(s) 409, 1128
Hpy188I TCNGA 6 cut(s) 140, 151, 364, 389, 552, 1008
Hpy188III TCNNGA 5 cut(s) 331, 421, 635, 728, 830
Hpy8I GTNNAC 2 cut(s) 409, 1128
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 254, 1015
HpyCH4IV ACGT 2 cut(s) 456, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 1077
HpyF3I CTNAG 5 cut(s) 89, 150, 208, 536, 918
HpySE526I ACGT 2 cut(s) 456, 530
Hsp92II CATG 9 cut(s) 307, 613, 752, 874, 886, 998, 1126, 1141, 1182
HspAI GCGC 2 cut(s) 1159, 1161
Kzo9I GATC 4 cut(s) 200, 322, 359, 472
LmnI GCTCC 2 cut(s) 423, 508
Lsp1109I GCAGC 6 cut(s) 58, 89, 112, 734, 764, 793
LweI GCATC 2 cut(s) 709, 904
MaeI CTAG 2 cut(s) 159, 579
MaeII ACGT 2 cut(s) 456, 530
MaeIII GTNAC 1 cut(s) 161
MalI GATC 4 cut(s) 202, 324, 361, 474
MboI GATC 4 cut(s) 200, 322, 359, 472
MboII GAAGA 7 cut(s) 129, 595, 737, 818, 923, 963, 1057
MflI RGATCY 4 cut(s) 200, 322, 359, 472
MhlI GDGCHC 1 cut(s) 145
Mph1103I ATGCAT 2 cut(s) 283, 741
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 4 cut(s) 375, 459, 713, 1083
MslI CAYNNNNRTG 3 cut(s) 595, 1066, 1140
MspI CCGG 1 cut(s) 1036
MvnI CGCG 1 cut(s) 1161
MwoI GCNNNNNNNGC 2 cut(s) 55, 1077
NcoI CCATGG 1 cut(s) 882
NdeII GATC 4 cut(s) 200, 322, 359, 472
NlaIII CATG 9 cut(s) 307, 613, 752, 874, 886, 998, 1126, 1141, 1182
NlaIV GGNNCC 3 cut(s) 361, 488, 510
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 2 cut(s) 283, 741
NspI RCATGY 1 cut(s) 613
OliI CACNNNNGTG 2 cut(s) 595, 1066
PauI GCGCGC 1 cut(s) 1159
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 4 cut(s) 212, 290, 575, 968
PkrI GCNGC 6 cut(s) 48, 104, 127, 724, 754, 808
Ppu21I YACGTR 1 cut(s) 531
PsiI TTATAA 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 361, 488, 510
PspPI GGNCC 1 cut(s) 1001
PstI CTGCAG 2 cut(s) 787, 811
PstNI CAGNNNCTG 1 cut(s) 791
PsuI RGATCY 4 cut(s) 200, 322, 359, 472
PteI GCGCGC 1 cut(s) 1159
RseI CAYNNNNRTG 3 cut(s) 595, 1066, 1140
SacI GAGCTC 1 cut(s) 145
SaqAI TTAA 4 cut(s) 375, 459, 713, 1083
SatI GCNGC 6 cut(s) 47, 103, 126, 723, 753, 807
Sau3AI GATC 4 cut(s) 200, 322, 359, 472
Sau96I GGNCC 1 cut(s) 1001
SduI GDGCHC 1 cut(s) 145
SfaNI GCATC 2 cut(s) 709, 904
SfcI CTRYAG 3 cut(s) 783, 807, 1114
SinI GGWCC 1 cut(s) 1001
SmiMI CAYNNNNRTG 3 cut(s) 595, 1066, 1140
SmlI CTYRAG 1 cut(s) 769
SmoI CTYRAG 1 cut(s) 769
SnaBI TACGTA 1 cut(s) 531
SsiI CCGC 1 cut(s) 501
SspMI CTAG 2 cut(s) 159, 579
SstI GAGCTC 1 cut(s) 145
StyI CCWWGG 1 cut(s) 882
TaiI ACGT 2 cut(s) 459, 533
TaqI TCGA 5 cut(s) 77, 482, 693, 928, 1169
TfiI GAWTC 4 cut(s) 212, 290, 575, 968
Tru1I TTAA 4 cut(s) 375, 459, 713, 1083
Tru9I TTAA 4 cut(s) 375, 459, 713, 1083
TscAI CASTG 2 cut(s) 271, 762
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 6 cut(s) 46, 102, 125, 722, 752, 806
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 6 cut(s) 303, 477, 737, 983, 1058, 1110
TspRI CASTG 2 cut(s) 271, 762
VpaK11BI GGWCC 1 cut(s) 1001
XapI RAATTY 5 cut(s) 84, 553, 709, 954, 980
XceI RCATGY 1 cut(s) 613
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 2 cut(s) 159, 579
Zsp2I ATGCAT 2 cut(s) 283, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.