RchiOBHm_Chr1g0350991

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000330
Physical Location & Seq
Forward (+)
44150410 .. 44151940
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57681

Sequence Viewer

Length: 900 bp
ATGAGATGTACTTTGGATTCAATGTTCAAAGTTGGGTTTGGAATAGAACTGAATTGCTTGGAGGGTTCAAGCAAAGATGGGATAGAATTTATGAAGGCATTTGATGAGTCAACTGCTTTGACCTATTGGCGATATGTTGATCCATTCTGGCAATTGAAAAGGTTTCTCAATATTGGTTGTGAGGCCGCCCTTAAAAAGTATGTCAAAGTCATTCATGATTTTGTGCACCAACATATCAGGAGAAAGAGGGAATTGCTAGCTGTGAAGAAAGATGGTAATGACAAGGAGGACATACTCTCGAGGTTTCTATTGGAGAGTGAGAAGAATCCAGAGGAGATGAATGATAAATATCTAAGAGACATAATTCTGAATTTTATGATTGCTGGGAAAGATACCAGTGCAAACACGCTGTCATGGTTCTTCTACATGCTCTGCAAGCACCCTCTCATGCAAGAAAAAGTTGCACAAGAAGTGAGGGATGTAATTGGTAATCAGGAAAAGGATGACATTCTTCCTGATGGCTTTAGACTTAAAAAAGGAGACGGAATAAACTACATGGCATATTCCATGGGGAGAATGCCTTATATTTGGGGACAAGATGCTGAGGATTTCAGACCTGAAATATGGCTCAACAATGGAGTTTTCCAGCCTGAATCAACTTTCAAATTTGTCACATTTCATGCAGGCCCTCGGATCTGTCTAGGGAAGGACTTTGCTTACAGACAGATGAAGATAGTAACAACGGCTCTTCTTTACTTCTTCCGCTTCAAATTGGTTGATGAAACAACAAATGTAACCTACAGAACCATGTTCAATTGTTCACCCTTCACATCCATGGTTCTCTCCCTATGCTTGCAGTTCCAAGGGCCAAGCTCAAGTAAAACGTACTTACATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

299

Amino Acids

35.02

Weight (kDa)

8.34

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 166 3.5e-26 Cytochrome P450
p450 PF00067 169 - 263 2.4e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 186, 763
AclWI GGATC 2 cut(s) 134, 701
AcsI RAATTY 3 cut(s) 86, 370, 665
AfaI GTAC 2 cut(s) 10, 887
AgsI TTSAA 7 cut(s) 21, 28, 69, 157, 664, 769, 814
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 2 cut(s) 260, 873
AluI AGCT 2 cut(s) 260, 873
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 351, 534
Alw44I GTGCAC 1 cut(s) 224
AlwI GGATC 2 cut(s) 134, 701
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 3 cut(s) 183, 685, 866
ApaLI GTGCAC 1 cut(s) 224
ApoI RAATTY 3 cut(s) 86, 370, 665
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
AspS9I GGNCC 2 cut(s) 686, 866
AsuHPI GGTGA 1 cut(s) 813
AsuNHI GCTAGC 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 298
BaeGI GKGCMC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 228
BbvCI CCTCAGC 1 cut(s) 603
BccI CCATC 3 cut(s) 71, 266, 512
BceAI ACGGC 1 cut(s) 759
BcoDI GTCTC 2 cut(s) 351, 534
BfaI CTAG 2 cut(s) 257, 701
BfmI CTRYAG 1 cut(s) 799
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 686, 866
BmsI GCATC 1 cut(s) 589
BmtI GCTAGC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 859
BsaBI GATNNNNATC 1 cut(s) 348
BsaJI CCNNGG 4 cut(s) 567, 689, 834, 862
Bse1I ACTGG 1 cut(s) 396
Bse8I GATNNNNATC 1 cut(s) 348
BseDI CCNNGG 4 cut(s) 567, 689, 834, 862
BseGI GGATG 3 cut(s) 484, 508, 830
BseJI GATNNNNATC 1 cut(s) 348
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 228
BseYI CCCAGC 1 cut(s) 383
BshFI GGCC 3 cut(s) 185, 687, 868
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 606
BsmAI GTCTC 2 cut(s) 351, 534
BsmBI CGTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 606
BsmI GAATGC 1 cut(s) 582
BsnI GGCC 3 cut(s) 185, 687, 868
BsoBI CYCGRG 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 139, 693
Bsp19I CCATGG 2 cut(s) 567, 834
BspACI CCGC 2 cut(s) 186, 763
BspANI GGCC 3 cut(s) 185, 687, 868
BspCNI CTCAG 1 cut(s) 595
BspHI TCATGA 1 cut(s) 214
BspOI GCTAGC 1 cut(s) 260
BspPI GGATC 2 cut(s) 134, 701
BspQI GCTCTTC 1 cut(s) 753
BsrI ACTGG 1 cut(s) 396
BssECI CCNNGG 4 cut(s) 567, 689, 834, 862
BssMI GATC 2 cut(s) 139, 693
BssT1I CCWWGG 3 cut(s) 567, 834, 862
Bst6I CTCTTC 1 cut(s) 753
BstC8I GCNNGC 4 cut(s) 258, 437, 685, 854
BstDEI CTNAG 2 cut(s) 353, 603
BstDSI CCRYGG 2 cut(s) 567, 834
BstF5I GGATG 3 cut(s) 484, 508, 830
BstKTI GATC 2 cut(s) 142, 696
BstMAI GTCTC 2 cut(s) 351, 534
BstMBI GATC 2 cut(s) 139, 693
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstNSI RCATGY 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 799
BstSLI GKGCMC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 693
BstYI RGATCY 1 cut(s) 693
BsuRI GGCC 3 cut(s) 185, 687, 868
BtgI CCRYGG 2 cut(s) 567, 834
BtsCI GGATG 3 cut(s) 484, 508, 830
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 4 cut(s) 258, 437, 685, 854
CciI TCATGA 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 686, 866
Csp6I GTAC 2 cut(s) 9, 886
CviAII CATG 9 cut(s) 215, 414, 427, 448, 556, 568, 680, 808, 835
CviJI RGCY 9 cut(s) 185, 260, 522, 628, 649, 687, 746, 868, 873
CviKI_1 RGCY 9 cut(s) 185, 260, 522, 628, 649, 687, 746, 868, 873
CviQI GTAC 2 cut(s) 9, 886
DdeI CTNAG 2 cut(s) 353, 603
DpnI GATC 2 cut(s) 141, 695
DpnII GATC 2 cut(s) 139, 693
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
Eco130I CCWWGG 3 cut(s) 567, 834, 862
Eco88I CYCGRG 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 686
EcoT14I CCWWGG 3 cut(s) 567, 834, 862
ErhI CCWWGG 3 cut(s) 567, 834, 862
Esp3I CGTCTC 1 cut(s) 534
FaeI CATG 9 cut(s) 218, 417, 430, 451, 559, 571, 683, 811, 838
FaqI GGGAC 1 cut(s) 606
FatI CATG 9 cut(s) 214, 413, 426, 447, 555, 567, 679, 807, 834
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 3 cut(s) 491, 515, 817
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 2 cut(s) 257, 701
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 3 cut(s) 185, 687, 868
Hin1II CATG 9 cut(s) 218, 417, 430, 451, 559, 571, 683, 811, 838
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 4 cut(s) 17, 107, 325, 653
HphI GGTGA 1 cut(s) 813
Hpy166II GTNNAC 3 cut(s) 111, 226, 821
Hpy188I TCNGA 3 cut(s) 369, 614, 693
Hpy188III TCNNGA 6 cut(s) 215, 238, 298, 329, 494, 515
Hpy8I GTNNAC 3 cut(s) 111, 226, 821
HpyAV CCTTC 3 cut(s) 88, 700, 835
HpyCH4IV ACGT 1 cut(s) 884
HpyCH4V TGCA 7 cut(s) 226, 401, 435, 451, 464, 683, 856
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
HpyF3I CTNAG 2 cut(s) 353, 603
HpySE526I ACGT 1 cut(s) 884
Hsp92II CATG 9 cut(s) 218, 417, 430, 451, 559, 571, 683, 811, 838
Kzo9I GATC 2 cut(s) 139, 693
LguI GCTCTTC 1 cut(s) 753
LweI GCATC 1 cut(s) 589
MaeI CTAG 2 cut(s) 257, 701
MaeII ACGT 1 cut(s) 884
MaeIII GTNAC 3 cut(s) 670, 736, 793
MalI GATC 2 cut(s) 141, 695
MboI GATC 2 cut(s) 139, 693
MboII GAAGA 7 cut(s) 277, 334, 412, 503, 740, 742, 751
MfeI CAATTG 2 cut(s) 152, 814
MflI RGATCY 1 cut(s) 693
MhlI GDGCHC 1 cut(s) 228
MlyI GAGTC 1 cut(s) 116
MseI TTAA 2 cut(s) 192, 531
MslI CAYNNNNRTG 1 cut(s) 833
MunI CAATTG 2 cut(s) 152, 814
Mva1269I GAATGC 1 cut(s) 582
MwoI GCNNNNNNNGC 1 cut(s) 436
NcoI CCATGG 2 cut(s) 567, 834
NdeII GATC 2 cut(s) 139, 693
NheI GCTAGC 1 cut(s) 256
NlaIII CATG 9 cut(s) 218, 417, 430, 451, 559, 571, 683, 811, 838
NmuCI GTSAC 1 cut(s) 670
NspI RCATGY 1 cut(s) 430
PaeR7I CTCGAG 1 cut(s) 298
PagI TCATGA 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 753
PctI GAATGC 1 cut(s) 582
PfeI GAWTC 3 cut(s) 17, 325, 653
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 383
PspPI GGNCC 2 cut(s) 686, 866
PsuI RGATCY 1 cut(s) 693
RsaI GTAC 2 cut(s) 10, 887
RsaNI GTAC 2 cut(s) 9, 886
RseI CAYNNNNRTG 1 cut(s) 833
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 2 cut(s) 192, 531
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 139, 693
Sau96I GGNCC 2 cut(s) 686, 866
SchI GAGTC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 228
SetI ASST 8 cut(s) 125, 164, 262, 305, 619, 800, 875, 887
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 1 cut(s) 799
Sfr274I CTCGAG 1 cut(s) 298
SlaI CTCGAG 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 833
SmlI CTYRAG 2 cut(s) 298, 874
SmoI CTYRAG 2 cut(s) 298, 874
SsiI CCGC 2 cut(s) 186, 763
SspI AATATT 1 cut(s) 172
SspMI CTAG 2 cut(s) 257, 701
StyI CCWWGG 3 cut(s) 567, 834, 862
TaiI ACGT 1 cut(s) 887
TaqI TCGA 1 cut(s) 299
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 3 cut(s) 17, 325, 653
Tru1I TTAA 2 cut(s) 192, 531
Tru9I TTAA 2 cut(s) 192, 531
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 670
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 6 cut(s) 107, 203, 353, 668, 743, 795
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 1 cut(s) 403
VneI GTGCAC 1 cut(s) 224
XapI RAATTY 3 cut(s) 86, 370, 665
XceI RCATGY 1 cut(s) 430
XhoI CTCGAG 1 cut(s) 298
XspI CTAG 2 cut(s) 257, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.