Rh1AG230700

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000330
Physical Location & Seq
Forward (+)
43760223 .. 43772232
12010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG230700.1

Sequence Viewer

Length: 381 bp
ATGCAGGATTTGCTTATGAGATGTACCTTGGATTCAATATTCAAAGTTGGGTTTGGAATAGAACTGAATTGCTTGGAGGGTTCAAGCAAAGAAGGGATAGAATTTATGAAGGCATTTGATGAGTCAACTGCTTTGACCTATTGGCGATATGTTGATCCATTCTGGCAATTGAAAAGGTTTCTCAATATTGGTTGTGAGGCCACCCTTAAAAAGTATGTCAAAGTCATTCATGATTTTGTGCACCAACATATCAGGACAAAGAGGGAATTGCTAGCTGTGAAGAAAGATGGTTTTCTTATTAAGTTCCTTCACGAAGCCGTGGTGGAGTGGGTTGAAGTTGAAGCTATGCTACAAAACCTGTTTATTTGGAGAAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

126

Amino Acids

14.96

Weight (kDa)

6.42

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 95 2.3e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 101
AfaI GTAC 1 cut(s) 25
AgsI TTSAA 6 cut(s) 36, 43, 84, 172, 335, 341
AluBI AGCT 2 cut(s) 275, 344
AluI AGCT 2 cut(s) 275, 344
Alw21I GWGCWC 1 cut(s) 243
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 1 cut(s) 149
AoxI GGCC 1 cut(s) 198
ApaLI GTGCAC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 101
AsuNHI GCTAGC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 243
BarI GAAGNNNNNNTAC 2 cut(s) 333, 365
Bbv12I GWGCWC 1 cut(s) 243
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 302
BfaI CTAG 1 cut(s) 272
BmtI GCTAGC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 27, 318
BseDI CCNNGG 2 cut(s) 27, 318
BseSI GKGCMC 1 cut(s) 243
BshFI GGCC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 243
BsnI GGCC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 154
BspANI GGCC 1 cut(s) 200
BspHI TCATGA 1 cut(s) 229
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 1 cut(s) 149
BssECI CCNNGG 2 cut(s) 27, 318
BssMI GATC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 318
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSLI GKGCMC 1 cut(s) 243
BsuRI GGCC 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 273
CciI TCATGA 1 cut(s) 229
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 230
CviJI RGCY 4 cut(s) 200, 275, 317, 344
CviKI_1 RGCY 4 cut(s) 200, 275, 317, 344
CviQI GTAC 1 cut(s) 24
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 233
FaiI YATR 7 cut(s) 17, 107, 150, 216, 231, 249, 347
FatI CATG 1 cut(s) 229
FspBI CTAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 200
Hin1II CATG 1 cut(s) 233
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 2 cut(s) 32, 122
Hpy166II GTNNAC 2 cut(s) 126, 241
Hpy188III TCNNGA 3 cut(s) 230, 253, 311
Hpy8I GTNNAC 2 cut(s) 126, 241
HpyAV CCTTC 3 cut(s) 86, 103, 317
HpyCH4V TGCA 2 cut(s) 4, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Hsp92II CATG 1 cut(s) 233
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 148, 238, 371
MaeI CTAG 1 cut(s) 272
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 292
MfeI CAATTG 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 4 cut(s) 67, 101, 167, 266
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 3 cut(s) 70, 190, 255
MseI TTAA 2 cut(s) 207, 300
MunI CAATTG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 154
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 1 cut(s) 233
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 1 cut(s) 32
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 207, 300
Sau3AI GATC 1 cut(s) 154
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 243
SetI ASST 6 cut(s) 29, 140, 179, 277, 346, 360
Sse9I AATT 4 cut(s) 67, 101, 167, 266
SspI AATATT 2 cut(s) 39, 187
SspMI CTAG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 27
TasI AATT 4 cut(s) 67, 101, 167, 266
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 2 cut(s) 207, 300
Tru9I TTAA 2 cut(s) 207, 300
TspDTI ATGAA 2 cut(s) 122, 218
VneI GTGCAC 1 cut(s) 239
XapI RAATTY 1 cut(s) 101
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.