RLG00000026651

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000330
Physical Location & Seq
Reverse (-)
4594867 .. 4595330
464 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026651

Sequence Viewer

Length: 315 bp
ATGGGAAGGATGAAATCTCTATGGGGAGATGATGCCGAAGAGTTTCAGCCAGAGAGATGGCTCGACGAAAATGGTCTTCTCAAGGATGAAAGCCCTTACAAATTCACAGCTTTCAGTGCCGGTCCAAGAATTTGTCTAGGAAATGATCATTCCTATATGCAGATGAAGATATTTTCTGCTGTGCTTTTAGGCAGCTATATATTCAAGCTAGCTGATGAGAAAAGAGTGGTCACTTACAAGACCACTGTCAGCTTCCTAATTGATGGAGGCCTCCATGTTCATGCATCCCCAAGATCAGGGCATGCAAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

105

Amino Acids

11.77

Weight (kDa)

6.9

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 82 1.7e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 101, 129
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 5 cut(s) 110, 195, 208, 212, 252
AluI AGCT 5 cut(s) 110, 195, 208, 212, 252
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 2 cut(s) 101, 129
Asp700I GAANNNNTTC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 122
AsuNHI GCTAGC 1 cut(s) 208
AvaII GGWCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 204
BccI CCATC 2 cut(s) 51, 257
BclI TGATCA 1 cut(s) 145
BfaI CTAG 2 cut(s) 137, 209
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmsI GCATC 2 cut(s) 22, 293
BmtI GCTAGC 1 cut(s) 212
BoxI GACNNNNGTC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 119
BseGI GGATG 3 cut(s) 15, 91, 284
BseLI CCNNNNNNNGG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 204
BshFI GGCC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 296
BsnI GGCC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 145, 293
BspANI GGCC 1 cut(s) 270
BspOI GCTAGC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssMI GATC 2 cut(s) 145, 293
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 210, 303
BstF5I GGATG 3 cut(s) 15, 91, 284
BstKTI GATC 2 cut(s) 148, 296
BstMBI GATC 2 cut(s) 145, 293
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 305
BstPAI GACNNNNGTC 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 3 cut(s) 15, 91, 284
BtsIMutI CAGTG 2 cut(s) 121, 243
Cac8I GCNNGC 2 cut(s) 210, 303
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 3 cut(s) 275, 281, 302
CviJI RGCY 9 cut(s) 49, 61, 93, 110, 195, 208, 212, 252, 270
CviKI_1 RGCY 9 cut(s) 49, 61, 93, 110, 195, 208, 212, 252, 270
DpnI GATC 2 cut(s) 147, 295
DpnII GATC 2 cut(s) 145, 293
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 286
FaeI CATG 3 cut(s) 278, 284, 305
FaiI YATR 8 cut(s) 22, 156, 158, 198, 200, 276, 282, 303
FatI CATG 3 cut(s) 274, 280, 301
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 3 cut(s) 22, 98, 271
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 2 cut(s) 137, 209
GluI GCNGC 1 cut(s) 193
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 120
Hin1II CATG 3 cut(s) 278, 284, 305
HpaII CCGG 1 cut(s) 120
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 160, 284, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 3 cut(s) 278, 284, 305
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 2 cut(s) 145, 293
LpnPI CCDG 3 cut(s) 63, 133, 282
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 2 cut(s) 22, 293
MaeI CTAG 2 cut(s) 137, 209
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 147, 295
MboI GATC 2 cut(s) 145, 293
MboII GAAGA 3 cut(s) 50, 68, 178
MluCI AATT 3 cut(s) 101, 129, 258
MnlI CCTC 2 cut(s) 260, 281
Mph1103I ATGCAT 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 1 cut(s) 313
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 2 cut(s) 145, 293
NheI GCTAGC 1 cut(s) 208
NlaIII CATG 3 cut(s) 278, 284, 305
NmuCI GTSAC 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 286
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PceI AGGCCT 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 194
PshAI GACNNNNGTC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 1 cut(s) 193
Sau3AI GATC 2 cut(s) 145, 293
Sau96I GGNCC 1 cut(s) 122
SetI ASST 6 cut(s) 112, 197, 210, 214, 254, 313
SfaNI GCATC 2 cut(s) 22, 293
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SphI GCATGC 1 cut(s) 305
Sse9I AATT 3 cut(s) 101, 129, 258
SseBI AGGCCT 1 cut(s) 270
SspMI CTAG 2 cut(s) 137, 209
StuI AGGCCT 1 cut(s) 270
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 63
TasI AATT 3 cut(s) 101, 129, 258
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 2 cut(s) 121, 250
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 4 cut(s) 26, 102, 179, 269
TspRI CASTG 2 cut(s) 121, 250
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 2 cut(s) 101, 129
XceI RCATGY 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 137, 209
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.