Rorug01G0216300

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000330
Physical Location & Seq
Reverse (-)
30891154 .. 30896183
5030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0216300.1

Sequence Viewer

Length: 918 bp
ATGGTTCTGTCACAGAGGCTTCACGAGGCGTTCAAAGGCACCGTCGAGAAAATCACAGGGCCTCGCACCGTCTCCGCTTTCAAAGAGAAAGGCGTCCTCAGCGTCTCCGAGTTCGTCACCGCCGGCGATAACCTCGTCTCCAAGTGCCCTACCTGGTCTTGGGAATCCGGAGAGCCAAGCAAGAGGAAGCCATACCTACCATCTGAAAAGCAGTATTTGATTACTAGAAATGTCCCTTGTTTACGCAGGGCTGCTTGTGTGGAAGAGGAGTATGAAGCTGCAGGTTCGGAAGTTCTTATCGATAATGAAGATAATGATGGCTGGTTGGCAACACACGGGAAGCCAAAGGATAAAAGTAGTGAGGAGGAAAACTTTCCTTCCATTGAAAGTTTAGAAATCAGCAAGGTGAAGTCAGACCCCTCGCAAGTCGGGGGTGAAGATGAAGATGATATCCCTGACATGGCTGATTATGAAGAAGCTGACAACATTGAAATAGATCCTGGAACATATCTTGTTGCTCATGAACCTGATGATGACAATATTTTACGGACCCGGACATATGATGTCAGCATTACGTATGATAAATATTACCAAACTCCTCGGGTGTGGCTTACTGGCTATGATGAGTCAAGAATGCTTTTACAAGCTGAGCTTGTACTTGAAGATGTCAGTCAAGATCATGCACGCAAAACTGTAACTATTGAGGATCATCCTCACTTGCCTGGAAAGCATGCATCTGTCCATCCATGCCGACATGGGGCTGTGATGAAGAAAATAATTGATGTACTAATGTCACGTGGAGTGGAACCGGAAGTCGATAAGTACCTCTTCTTATTCTTGAAATTTGTTGCCTCTGTGATTCCAACCATCGAATATGACTATACGATGGACTTTGATCTTGGCAGCTCCAGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

305

Amino Acids

34.41

Weight (kDa)

4.69

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Autophagy_act_C PF03987 37 - 294 1.8e-59 Autophagocytosis associated protein, active-site domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 38
AccIII TCCGGA 1 cut(s) 167
AciI CCGC 2 cut(s) 75, 120
AclWI GGATC 2 cut(s) 491, 714
AcsI RAATTY 1 cut(s) 842
AcvI CACGTG 1 cut(s) 797
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 3 cut(s) 657, 786, 824
AfiI CCNNNNNNNGG 3 cut(s) 159, 460, 757
AgsI TTSAA 6 cut(s) 34, 82, 386, 491, 662, 841
AjnI CCWGG 3 cut(s) 152, 499, 721
AluBI AGCT 5 cut(s) 278, 479, 647, 652, 906
AluI AGCT 5 cut(s) 278, 479, 647, 652, 906
Alw26I GTCTC 3 cut(s) 76, 109, 142
AlwI GGATC 2 cut(s) 491, 714
Ama87I CYCGRG 1 cut(s) 600
Aor13HI TCCGGA 1 cut(s) 167
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 3 cut(s) 251, 278, 903
ApoI RAATTY 1 cut(s) 842
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
Asp700I GAANNNNTTC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 59, 549
AsuC2I CCSGG 1 cut(s) 553
AsuHPI GGTGA 3 cut(s) 109, 418, 446
AvaI CYCGRG 1 cut(s) 600
AvaII GGWCC 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 38
BauI CACGAG 1 cut(s) 23
BbrPI CACGTG 1 cut(s) 797
BbvCI CCTCAGC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 238, 265
BccI CCATC 5 cut(s) 208, 311, 750, 875, 880
BciT130I CCWGG 3 cut(s) 154, 501, 723
BcnI CCSGG 1 cut(s) 553
BcoDI GTCTC 3 cut(s) 76, 109, 142
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 272
BisI GCNGC 3 cut(s) 252, 279, 904
BlpI GCTNAGC 1 cut(s) 648
BlsI GCNGC 3 cut(s) 253, 280, 905
Bme1390I CCNGG 4 cut(s) 154, 501, 553, 723
Bme18I GGWCC 1 cut(s) 549
BmeT110I CYCGRG 1 cut(s) 600
BmgT120I GGNCC 2 cut(s) 59, 549
BmiI GGNNCC 3 cut(s) 40, 551, 807
BmrFI CCNGG 4 cut(s) 154, 501, 553, 723
BmsI GCATC 1 cut(s) 743
BpmI CTGGAG 1 cut(s) 892
Bpu10I CCTNAGC 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 648
BpuMI CCSGG 1 cut(s) 553
Bsa29I ATCGAT 1 cut(s) 300
BsaAI YACGTR 2 cut(s) 576, 797
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 599
BsaWI WCCGGW 2 cut(s) 167, 808
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 460, 757
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 619
BseAI TCCGGA 1 cut(s) 167
BseBI CCWGG 3 cut(s) 154, 501, 723
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 599
BseGI GGATG 2 cut(s) 709, 742
BseLI CCNNNNNNNGG 3 cut(s) 159, 460, 757
BseMII CTCAG 2 cut(s) 112, 639
BseNI ACTGG 1 cut(s) 619
BseRI GAGGAG 3 cut(s) 281, 377, 588
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 2 cut(s) 238, 265
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 600
BsiSI CCGG 4 cut(s) 123, 168, 553, 809
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 3 cut(s) 159, 460, 757
BsmAI GTCTC 3 cut(s) 76, 109, 142
BsmBI CGTCTC 3 cut(s) 76, 109, 142
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 149
Bsp13I TCCGGA 1 cut(s) 167
Bsp143I GATC 4 cut(s) 496, 676, 706, 895
Bsp1720I GCTNAGC 1 cut(s) 648
BspACI CCGC 2 cut(s) 75, 120
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 2 cut(s) 111, 640
BspDI ATCGAT 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 167
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 3 cut(s) 40, 551, 807
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 272
BspPI GGATC 2 cut(s) 491, 714
BspT107I GGYRCC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 619
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 599
BssMI GATC 4 cut(s) 496, 676, 706, 895
BssNI GRCGYC 1 cut(s) 93
BssSI CACGAG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 23
Bst2UI CCWGG 3 cut(s) 154, 501, 723
Bst4CI ACNGT 3 cut(s) 43, 70, 694
Bst6I CTCTTC 2 cut(s) 258, 833
BstACI GRCGYC 1 cut(s) 93
BstBAI YACGTR 2 cut(s) 576, 797
BstC8I GCNNGC 3 cut(s) 124, 685, 732
BstDEI CTNAG 2 cut(s) 98, 648
BstF5I GGATG 2 cut(s) 709, 742
BstKTI GATC 4 cut(s) 499, 679, 709, 898
BstMAI GTCTC 3 cut(s) 76, 109, 142
BstMBI GATC 4 cut(s) 496, 676, 706, 895
BstMWI GCNNNNNNNGC 3 cut(s) 99, 727, 909
BstNI CCWGG 3 cut(s) 154, 501, 723
BstNSI RCATGY 1 cut(s) 734
BstSCI CCNGG 4 cut(s) 152, 499, 551, 721
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 149
BstSNI TACGTA 1 cut(s) 576
BstV1I GCAGC 2 cut(s) 238, 265
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 1 cut(s) 61
BsuTUI ATCGAT 1 cut(s) 300
BtsCI GGATG 2 cut(s) 709, 742
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 3 cut(s) 124, 685, 732
CciI TCATGA 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 59, 549
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 2 cut(s) 82, 91
CsiI ACCWGGT 1 cut(s) 152
Csp6I GTAC 3 cut(s) 656, 785, 823
CviAII CATG 6 cut(s) 460, 521, 680, 731, 747, 755
CviQI GTAC 3 cut(s) 656, 785, 823
DdeI CTNAG 2 cut(s) 98, 648
DpnI GATC 4 cut(s) 498, 678, 708, 897
DpnII GATC 4 cut(s) 496, 676, 706, 895
Eam1104I CTCTTC 2 cut(s) 258, 833
EarI CTCTTC 2 cut(s) 258, 833
Eco105I TACGTA 1 cut(s) 576
Eco32I GATATC 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 549
Eco72I CACGTG 1 cut(s) 797
Eco88I CYCGRG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 3 cut(s) 152, 499, 721
EcoRV GATATC 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 736
Esp3I CGTCTC 3 cut(s) 76, 109, 142
FaeI CATG 6 cut(s) 463, 524, 683, 734, 750, 758
FalI AAGNNNNNCTT 4 cut(s) 636, 668, 812, 844
FaqI GGGAC 1 cut(s) 218
FatI CATG 6 cut(s) 459, 520, 679, 730, 746, 754
FauNDI CATATG 1 cut(s) 559
Fnu4HI GCNGC 3 cut(s) 252, 279, 904
FokI GGATG 2 cut(s) 696, 729
Fsp4HI GCNGC 3 cut(s) 252, 279, 904
FspBI CTAG 1 cut(s) 225
GluI GCNGC 3 cut(s) 252, 279, 904
GsuI CTGGAG 1 cut(s) 892
HaeIII GGCC 1 cut(s) 61
HapII CCGG 4 cut(s) 123, 168, 553, 809
HgaI GACGC 2 cut(s) 82, 91
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 6 cut(s) 463, 524, 683, 734, 750, 758
HinfI GANTC 3 cut(s) 164, 626, 859
HpaII CCGG 4 cut(s) 123, 168, 553, 809
HphI GGTGA 3 cut(s) 109, 418, 446
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 4 cut(s) 109, 205, 289, 415
Hpy188III TCNNGA 7 cut(s) 23, 46, 168, 521, 630, 674, 838
Hpy8I GTNNAC 1 cut(s) 242
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 3 cut(s) 43, 70, 694
HpyCH4IV ACGT 2 cut(s) 575, 796
HpyCH4V TGCA 3 cut(s) 281, 683, 734
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 727, 909
HpyF3I CTNAG 2 cut(s) 98, 648
HpySE526I ACGT 2 cut(s) 575, 796
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 6 cut(s) 463, 524, 683, 734, 750, 758
Kpn2I TCCGGA 1 cut(s) 167
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Kzo9I GATC 4 cut(s) 496, 676, 706, 895
LmnI GCTCC 1 cut(s) 911
Lsp1109I GCAGC 2 cut(s) 238, 265
LweI GCATC 1 cut(s) 743
MabI ACCWGGT 1 cut(s) 152
MaeI CTAG 1 cut(s) 225
MaeII ACGT 2 cut(s) 575, 796
MaeIII GTNAC 4 cut(s) 9, 115, 694, 792
MalI GATC 4 cut(s) 498, 678, 708, 897
MboI GATC 4 cut(s) 496, 676, 706, 895
MboII GAAGA 8 cut(s) 275, 320, 449, 455, 485, 674, 781, 820
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 2 cut(s) 777, 842
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 1 cut(s) 887
Mph1103I ATGCAT 1 cut(s) 736
MreI CGCCGGCG 1 cut(s) 122
MroI TCCGGA 1 cut(s) 167
MroNI GCCGGC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 372
MspI CCGG 4 cut(s) 123, 168, 553, 809
MspR9I CCNGG 4 cut(s) 154, 501, 553, 723
Mva1269I GAATGC 1 cut(s) 639
MvaI CCWGG 3 cut(s) 154, 501, 723
MwoI GCNNNNNNNGC 3 cut(s) 99, 727, 909
NaeI GCCGGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 553
NdeI CATATG 1 cut(s) 559
NdeII GATC 4 cut(s) 496, 676, 706, 895
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 6 cut(s) 463, 524, 683, 734, 750, 758
NlaIV GGNNCC 3 cut(s) 40, 551, 807
NmuCI GTSAC 3 cut(s) 9, 115, 792
NsiI ATGCAT 1 cut(s) 736
NspI RCATGY 1 cut(s) 734
PaeI GCATGC 1 cut(s) 734
PagI TCATGA 1 cut(s) 520
PctI GAATGC 1 cut(s) 639
PdiI GCCGGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 2 cut(s) 164, 859
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 3 cut(s) 253, 280, 905
PleI GAGTC 1 cut(s) 634
PmaCI CACGTG 1 cut(s) 797
PmlI CACGTG 1 cut(s) 797
PpsI GAGTC 1 cut(s) 634
Ppu21I YACGTR 2 cut(s) 576, 797
Psp6I CCWGG 3 cut(s) 152, 499, 721
PspCI CACGTG 1 cut(s) 797
PspGI CCWGG 3 cut(s) 152, 499, 721
PspN4I GGNNCC 3 cut(s) 40, 551, 807
PspPI GGNCC 2 cut(s) 59, 549
PstI CTGCAG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 3 cut(s) 657, 786, 824
RsaNI GTAC 3 cut(s) 656, 785, 823
SatI GCNGC 3 cut(s) 252, 279, 904
Sau3AI GATC 4 cut(s) 496, 676, 706, 895
Sau96I GGNCC 2 cut(s) 59, 549
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 4 cut(s) 154, 501, 553, 723
SduI GDGCHC 1 cut(s) 149
SexAI ACCWGGT 1 cut(s) 152
SfaNI GCATC 1 cut(s) 743
SfcI CTRYAG 1 cut(s) 279
SgrAI CRCCGGYG 1 cut(s) 122
SinI GGWCC 1 cut(s) 549
SnaBI TACGTA 1 cut(s) 576
SphI GCATGC 1 cut(s) 734
Sse9I AATT 2 cut(s) 777, 842
SsiI CCGC 2 cut(s) 75, 120
SspI AATATT 2 cut(s) 541, 587
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 4 cut(s) 152, 499, 551, 721
TaaI ACNGT 3 cut(s) 43, 70, 694
TaiI ACGT 2 cut(s) 578, 799
TaqI TCGA 4 cut(s) 45, 300, 816, 870
TasI AATT 2 cut(s) 777, 842
TatI WGTACW 2 cut(s) 655, 784
TfiI GAWTC 2 cut(s) 164, 859
TseFI GTSAC 3 cut(s) 9, 115, 792
TseI GCWGC 3 cut(s) 251, 278, 903
Tsp45I GTSAC 3 cut(s) 9, 115, 792
TspDTI ATGAA 6 cut(s) 288, 321, 456, 486, 537, 782
TspGWI ACGGA 1 cut(s) 562
VpaK11BI GGWCC 1 cut(s) 549
XapI RAATTY 1 cut(s) 842
XceI RCATGY 1 cut(s) 734
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 1 cut(s) 225
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.