Rh1BG200600

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000330
Physical Location & Seq
Forward (+)
31736345 .. 31737836
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG200600.1

Sequence Viewer

Length: 567 bp
ATGGTTATTCTCTATTTCATCTTTGCTTTCACATGTCTGTTACTTTTCCTCTTCATAACTTTCTTGTCTTCCCTCATACTCAGAATCTTCACAGGCAAGTCCATCGGAGACCCAAGCTACCCACCTGTAAAAGGCACCGTTTTTCATCAGCTCTTATACTTCACCAAACTCTATGACCACCAAACCCAAATAGCCAGAGAAACCCCAACTTACCGGCTTCTTTCTCCTAACCACAGCTCTGTATACACATGTGATGCGCAAAATATAGAGCATGTCCTCAAAACCAAATTTTCCACATATACGAAAGGTGCATATAATGAACTTATAATGGGTGACACTTTTGGTCATGGGATATTTGTTGTTGATGGAGAGAAGTGGAGGCAGCAGAGGAAGCTTGCAAGTATGGAGTTCTCGACCAGGATTCTTAGAGATTTTAGCTGCTCCGTGTTTAGAAGAAATGCAGCCAAACTGGTTAAAGTTGTTCATGACTTTTCAGATTCCAATTGTTCTTTTGATATGCAGGTGAGTAATCTGAAACCAAAAATATTTTCTTTTTTGTTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

188

Amino Acids

21.78

Weight (kDa)

9.3

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 46 - 174 2.1e-10 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AarI CACCTGC 1 cut(s) 511
Acc16I TGCGCA 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 511
AccB1I GGYRCC 1 cut(s) 134
AccI GTMKAC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 131
AflIII ACRYGT 2 cut(s) 32, 248
AjnI CCWGG 1 cut(s) 416
AjuI GAANNNNNNNTTGG 2 cut(s) 532, 564
AluBI AGCT 5 cut(s) 117, 151, 237, 394, 438
AluI AGCT 5 cut(s) 117, 151, 237, 394, 438
Alw26I GTCTC 1 cut(s) 102
ApeKI GCWGC 3 cut(s) 382, 438, 461
ApoI RAATTY 1 cut(s) 287
AspLEI GCGC 1 cut(s) 259
AsuHPI GGTGA 3 cut(s) 154, 344, 535
BanI GGYRCC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 3 cut(s) 394, 425, 473
BccI CCATC 2 cut(s) 110, 359
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 511
BisI GCNGC 3 cut(s) 383, 439, 462
BlsI GCNGC 3 cut(s) 384, 440, 463
Bme1390I CCNGG 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 418
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 474
BseXI GCAGC 3 cut(s) 394, 425, 473
BshNI GGYRCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 213
BsrI ACTGG 1 cut(s) 474
BssAI RCCGGY 1 cut(s) 213
BssNAI GTATAC 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 80, 425
BstENI CCTNNNNNAGG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 418
BstNSI RCATGY 3 cut(s) 36, 252, 275
BstSCI CCNGG 1 cut(s) 416
BstV1I GCAGC 3 cut(s) 394, 425, 473
BstV2I GAAGAC 1 cut(s) 60
BstZ17I GTATAC 1 cut(s) 244
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 1 cut(s) 396
CciI TCATGA 1 cut(s) 484
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 213
CviAII CATG 5 cut(s) 33, 249, 272, 347, 485
CviJI RGCY 8 cut(s) 117, 151, 194, 217, 237, 394, 438, 464
CviKI_1 RGCY 8 cut(s) 117, 151, 194, 217, 237, 394, 438, 464
DdeI CTNAG 2 cut(s) 80, 425
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 416
FaeI CATG 5 cut(s) 36, 252, 275, 350, 488
FatI CATG 5 cut(s) 32, 248, 271, 346, 484
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 383, 439, 462
Fsp4HI GCNGC 3 cut(s) 383, 439, 462
FspI TGCGCA 1 cut(s) 258
GlaI GCGC 1 cut(s) 258
GluI GCNGC 3 cut(s) 383, 439, 462
HapII CCGG 1 cut(s) 214
HhaI GCGC 1 cut(s) 259
Hin1II CATG 5 cut(s) 36, 252, 275, 350, 488
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 3 cut(s) 84, 421, 497
HpaII CCGG 1 cut(s) 214
HphI GGTGA 3 cut(s) 154, 344, 535
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 4 cut(s) 83, 107, 496, 534
Hpy188III TCNNGA 2 cut(s) 412, 485
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 311, 398, 461, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 2 cut(s) 80, 425
Hsp92II CATG 5 cut(s) 36, 252, 275, 350, 488
HspAI GCGC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 446
LpnPI CCDG 8 cut(s) 78, 138, 208, 227, 403, 430, 455, 506
Lsp1109I GCAGC 3 cut(s) 394, 425, 473
LweI GCATC 1 cut(s) 244
MaeIII GTNAC 2 cut(s) 39, 332
MboII GAAGA 4 cut(s) 43, 60, 79, 465
MfeI CAATTG 1 cut(s) 502
MluCI AATT 2 cut(s) 287, 502
MnlI CCTC 5 cut(s) 59, 83, 287, 372, 381
MseI TTAA 1 cut(s) 474
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 418
MunI CAATTG 1 cut(s) 502
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 1 cut(s) 391
NlaIII CATG 5 cut(s) 36, 252, 275, 350, 488
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 332
NsbI TGCGCA 1 cut(s) 258
NspI RCATGY 3 cut(s) 36, 252, 275
PagI TCATGA 1 cut(s) 484
PaqCI CACCTGC 1 cut(s) 511
PciI ACATGT 2 cut(s) 32, 248
PfeI GAWTC 3 cut(s) 84, 421, 497
PkrI GCNGC 3 cut(s) 384, 440, 463
PscI ACATGT 2 cut(s) 32, 248
PsiI TTATAA 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 416
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 3 cut(s) 383, 439, 462
ScrFI CCNGG 1 cut(s) 418
SetI ASST 8 cut(s) 119, 127, 153, 239, 310, 396, 440, 525
SfaNI GCATC 1 cut(s) 244
Sse9I AATT 2 cut(s) 287, 502
SspI AATATT 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 413
TasI AATT 2 cut(s) 287, 502
TfiI GAWTC 3 cut(s) 84, 421, 497
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 3 cut(s) 382, 438, 461
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 5 cut(s) 7, 43, 134, 333, 473
TspGWI ACGGA 1 cut(s) 433
XagI CCTNNNNNAGG 1 cut(s) 129
XapI RAATTY 1 cut(s) 287
XceI RCATGY 3 cut(s) 36, 252, 275
XmiI GTMKAC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.