RchiOBHm_Chr1g0350941

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000330
Physical Location & Seq
Reverse (-)
44088496 .. 44090022
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57677

Sequence Viewer

Length: 738 bp
ATGACTATCACCACCCGAGTTGCGAGAGAATGCCCAACTCACCGGCTTCTTGCTCTAAACAGCAGCACAGTATATACATGTGACCCTCGAAACATTGAGCATTTTCTCAAGACCAACTTTGCTCATTACTCGAAAAGTGACTATAACCAATGTATTATGTCTGAGATTTTGGGACAGGGCATTTTTGTTGTTAATGGAGAGAAATGGAGGCAGCAGAAGAAGCTTGCTAGCTTTGAGTTCTCAACAAGGAATCTTGTTAGAGTTGTTTTTGAGTTTTTGGATTCCAAAAGGGTCTTTGATGTGCAGGATGTCAAAGTCACCCATGATTTTGTGCACCAACTTATCAGGAGAAAGAGGGAACTTCTAGCTGGCAAGAAAGATGGTCTTCATGCCACACTAACAGAGACCTTGAGGCTCTGCACTGAAGTTCCTGTGAGTGAAAAAAGGAGACAGAAGCCTTACATTTGGGGAGAAGATGCTGAGGATTTCCAACCTGAAAGATGGCTCGATAATGGAGTTTTCAAGCCCGAATCACCTTTCAAATTCGTCGCATTTCATGCAGGACCTCGGACCTGTCTAGGGAAGGACTTTGCTTACAGGCAGATTAAGACAGTAGCAATGGCTCTCCTTTGCTTCTTCCGCTTCAAATTGGCTGATGAAACAGGTTATAGGACCATGTTCACCCTTCACATAGATGGCACCCTCCCTGTGCTTGCACTTCCAAGGGCCACCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

245

Amino Acids

28.44

Weight (kDa)

9.31

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 153 - 226 8.7e-14 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 698
AciI CCGC 1 cut(s) 640
AcsI RAATTY 1 cut(s) 542
AcuI CTGAAG 1 cut(s) 444
AfiI CCNNNNNNNGG 1 cut(s) 579
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 3 cut(s) 523, 541, 646
AluBI AGCT 3 cut(s) 223, 231, 368
AluI AGCT 3 cut(s) 223, 231, 368
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 2 cut(s) 398, 442
Alw44I GTGCAC 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 1 cut(s) 726
ApaLI GTGCAC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 63, 211
ApoI RAATTY 1 cut(s) 542
AspS9I GGNCC 4 cut(s) 563, 570, 672, 726
AsuHPI GGTGA 4 cut(s) 32, 310, 525, 673
AsuNHI GCTAGC 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 15
AvaII GGWCC 3 cut(s) 563, 570, 672
BaeGI GKGCMC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 698
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 480
BbvI GCAGC 2 cut(s) 75, 223
BccI CCATC 3 cut(s) 374, 495, 689
BcoDI GTCTC 2 cut(s) 398, 442
BfaI CTAG 3 cut(s) 228, 365, 578
BisI GCNGC 2 cut(s) 64, 212
BlsI GCNGC 2 cut(s) 65, 213
Bme18I GGWCC 3 cut(s) 563, 570, 672
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 4 cut(s) 563, 570, 672, 726
BmiI GGNNCC 1 cut(s) 700
BmsI GCATC 1 cut(s) 466
BmtI GCTAGC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 92, 430
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 566, 722
Bsc4I CCNNNNNNNGG 1 cut(s) 579
Bse118I RCCGGY 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 624
BseDI CCNNGG 2 cut(s) 566, 722
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 579
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 2 cut(s) 153, 471
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 2 cut(s) 75, 223
BsgI GTGCAG 2 cut(s) 323, 403
BshFI GGCC 1 cut(s) 728
BshNI GGYRCC 1 cut(s) 698
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 579
BsmAI GTCTC 2 cut(s) 398, 442
BsmFI GGGAC 1 cut(s) 186
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 1 cut(s) 728
Bso31I GGTCTC 1 cut(s) 398
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 336
BspACI CCGC 1 cut(s) 640
BspANI GGCC 1 cut(s) 728
BspCNI CTCAG 2 cut(s) 154, 472
BspLI GGNNCC 1 cut(s) 700
BspOI GCTAGC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 698
BspTNI GGTCTC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 566, 722
BssT1I CCWWGG 1 cut(s) 722
Bst4CI ACNGT 2 cut(s) 70, 613
BstAPI GCANNNNNTGC 1 cut(s) 557
BstC8I GCNNGC 4 cut(s) 225, 229, 370, 714
BstDEI CTNAG 2 cut(s) 162, 480
BstF5I GGATG 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 398, 442
BstMWI GCNNNNNNNGC 3 cut(s) 220, 557, 639
BstNSI RCATGY 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 75, 223
BstV2I GAAGAC 1 cut(s) 377
BsuRI GGCC 1 cut(s) 728
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 4 cut(s) 225, 229, 370, 714
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 4 cut(s) 563, 570, 672, 726
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 5 cut(s) 78, 323, 389, 557, 676
DdeI CTNAG 2 cut(s) 162, 480
Eco130I CCWWGG 1 cut(s) 722
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 3 cut(s) 563, 570, 672
Eco57I CTGAAG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 563
EcoT14I CCWWGG 1 cut(s) 722
ErhI CCWWGG 1 cut(s) 722
FaeI CATG 5 cut(s) 81, 326, 392, 560, 679
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 369, 401
FaqI GGGAC 1 cut(s) 186
FatI CATG 5 cut(s) 77, 322, 388, 556, 675
Fnu4HI GCNGC 2 cut(s) 64, 212
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 2 cut(s) 64, 212
FspBI CTAG 3 cut(s) 228, 365, 578
GluI GCNGC 2 cut(s) 64, 212
HaeIII GGCC 1 cut(s) 728
HapII CCGG 1 cut(s) 43
Hin1II CATG 5 cut(s) 81, 326, 392, 560, 679
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 250, 281, 530
HpaII CCGG 1 cut(s) 43
HphI GGTGA 4 cut(s) 32, 310, 525, 673
Hpy166II GTNNAC 2 cut(s) 334, 681
Hpy188I TCNGA 2 cut(s) 163, 570
Hpy188III TCNNGA 2 cut(s) 109, 346
Hpy8I GTNNAC 2 cut(s) 334, 681
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 2 cut(s) 577, 695
HpyCH4III ACNGT 2 cut(s) 70, 613
HpyCH4V TGCA 5 cut(s) 304, 334, 420, 560, 716
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 557, 639
HpyF3I CTNAG 2 cut(s) 162, 480
Hsp92II CATG 5 cut(s) 81, 326, 392, 560, 679
Lsp1109I GCAGC 2 cut(s) 75, 223
LweI GCATC 1 cut(s) 466
MaeI CTAG 3 cut(s) 228, 365, 578
MaeIII GTNAC 3 cut(s) 80, 137, 316
MboII GAAGA 4 cut(s) 229, 377, 485, 628
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 2 cut(s) 542, 647
MmeI TCCRAC 1 cut(s) 514
MnlI CCTC 7 cut(s) 96, 201, 348, 405, 475, 576, 713
MseI TTAA 2 cut(s) 192, 606
MslI CAYNNNNRTG 1 cut(s) 693
MspI CCGG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 220, 557, 639
NheI GCTAGC 1 cut(s) 227
NlaIII CATG 5 cut(s) 81, 326, 392, 560, 679
NlaIV GGNNCC 1 cut(s) 700
NmuCI GTSAC 3 cut(s) 80, 137, 316
NspI RCATGY 1 cut(s) 81
PciI ACATGT 1 cut(s) 77
PctI GAATGC 1 cut(s) 35
PfeI GAWTC 3 cut(s) 250, 281, 530
PkrI GCNGC 2 cut(s) 65, 213
PpuMI RGGWCCY 1 cut(s) 563
PscI ACATGT 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 563
PspN4I GGNNCC 1 cut(s) 700
PspPI GGNCC 4 cut(s) 563, 570, 672, 726
PspPPI RGGWCCY 1 cut(s) 563
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 2 cut(s) 192, 606
SatI GCNGC 2 cut(s) 64, 212
Sau96I GGNCC 4 cut(s) 563, 570, 672, 726
SduI GDGCHC 1 cut(s) 336
SfaNI GCATC 1 cut(s) 466
SinI GGWCC 3 cut(s) 563, 570, 672
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 2 cut(s) 107, 409
SmoI CTYRAG 2 cut(s) 107, 409
Sse9I AATT 2 cut(s) 542, 647
SsiI CCGC 1 cut(s) 640
SspMI CTAG 3 cut(s) 228, 365, 578
StyI CCWWGG 1 cut(s) 722
TaaI ACNGT 2 cut(s) 70, 613
TaqI TCGA 3 cut(s) 88, 131, 507
TasI AATT 2 cut(s) 542, 647
TfiI GAWTC 3 cut(s) 250, 281, 530
Tru1I TTAA 2 cut(s) 192, 606
Tru9I TTAA 2 cut(s) 192, 606
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 3 cut(s) 80, 137, 316
TseI GCWGC 2 cut(s) 63, 211
Tsp45I GTSAC 3 cut(s) 80, 137, 316
TspDTI ATGAA 3 cut(s) 377, 545, 672
TspRI CASTG 1 cut(s) 427
VneI GTGCAC 1 cut(s) 332
VpaK11BI GGWCC 3 cut(s) 563, 570, 672
XapI RAATTY 1 cut(s) 542
XceI RCATGY 1 cut(s) 81
XspI CTAG 3 cut(s) 228, 365, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.