Rroxscaffold_4G00304280

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000330
Physical Location & Seq
Forward (+)
24946843 .. 24947226
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00304280.1

Sequence Viewer

Length: 291 bp
ATGCTGAGGATTTCTGACCTGAAAGATGGCTCGATAATGGAGTTTTCAAGCCCGAATCACCTTTCAAATTCGTCGCATTTCATGTTAGCACCACCTCGGATCTGTCTAGGGAAGGACTTTGCTTACAGGCAGATTAAGATAGTAGCAATGGCTCTTCTTTGCTTCTTCCGCTTCAAATTGGCTGATGAAACAAGAAATGTAACCTATAGGACCATGTTCACCCTTCACAGAGATGGCACCCTCCCTATGCTTGCACTTCCAAGGACTACCTCACAGATTATTTTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

96

Amino Acids

11.07

Weight (kDa)

9.78

Isoelectric Point (pI)

19.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AciI CCGC 1 cut(s) 169
AclWI GGATC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 67
AgsI TTSAA 3 cut(s) 48, 66, 175
AlwI GGATC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 50, 211
AvaII GGWCC 1 cut(s) 210
BanI GGYRCC 1 cut(s) 236
BbvCI CCTCAGC 1 cut(s) 5
BccI CCATC 2 cut(s) 20, 227
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 95, 260
Bse3DI GCAATG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 95, 260
BseMI GCAATG 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 95, 260
BssMI GATC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 5
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 210
CviAII CATG 2 cut(s) 82, 214
CviJI RGCY 4 cut(s) 30, 51, 152, 182
CviKI_1 RGCY 4 cut(s) 30, 51, 152, 182
DdeI CTNAG 1 cut(s) 5
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 2 cut(s) 85, 217
FaiI YATR 6 cut(s) 83, 207, 215, 248, 287, 289
FatI CATG 2 cut(s) 81, 213
FauNDI CATATG 1 cut(s) 287
FspBI CTAG 1 cut(s) 107
Hin1II CATG 2 cut(s) 85, 217
HinfI GANTC 1 cut(s) 55
HphI GGTGA 2 cut(s) 50, 211
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 2 cut(s) 16, 99
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 106, 233
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 2 cut(s) 85, 217
Kzo9I GATC 1 cut(s) 99
LguI GCTCTTC 1 cut(s) 159
LpnPI CCDG 2 cut(s) 32, 112
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 199
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 146, 157
MflI RGATCY 1 cut(s) 99
MluCI AATT 2 cut(s) 67, 176
MnlI CCTC 3 cut(s) 105, 251, 280
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeI CATATG 1 cut(s) 287
NdeII GATC 1 cut(s) 99
NlaIII CATG 2 cut(s) 85, 217
NlaIV GGNNCC 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 210
PsuI RGATCY 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 210
SetI ASST 5 cut(s) 21, 63, 97, 206, 272
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 2 cut(s) 67, 176
SsiI CCGC 1 cut(s) 169
SspMI CTAG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 260
TaqI TCGA 1 cut(s) 32
TasI AATT 2 cut(s) 67, 176
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TspDTI ATGAA 3 cut(s) 70, 201, 274
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 1 cut(s) 67
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.