Rw1G019990

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000330
Physical Location & Seq
Forward (+)
43325814 .. 43327789
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019990.1

Sequence Viewer

Length: 1215 bp
ATGTGTGATGTTTTTGGGCAAGGGATATTTAATGTTGATGGAGAAAAGTGGAAACACCAGAGGAAGCTTGCAAGCTATGAGTTCTCAACCAGGGTTCTTAGAGATTTCAGCTGTTCTGTGTTTAGAAGAAGTGCTGCAAAATTGGTGAAAATTATTTTTGAGTTTTCGGATTCAAACGGGATTTTTGATATGCAGGACTTGCTTATGAGGTGTACCATGGATTCCATATTCAAAGTTGGGTTTGGAGTAGAACTAAATTGCTTGGAAGGGTCAAGCAAAGAAGGGATAGAATTCATGAAGGCCTTTGATGAGTCGACTGCTCTAACCTCTTGGCGCTTTGTTGATCCCCTCTGGAAATTGAAAAGATTTCTCAACATTGGTTCTGAGGCCGCCCTTAAAAAGTATGTCAAAGTCATACGTGATTTTGTTCACCAACTTATCAAGAGCAAGAGGGAACTGCTAGCTGGCCAGAAACATGGTGATGATAAGGAGGACATTGTCTCACGGTTTCTGTTGGAGAGTGAAAAGAATCCAGAGGAGATGAAAGATAAATATTTAAGTGATATAATTCTGAATTTTATGATTGCTGGGAAAGATACAAGTGCAAATACACTATCATGGTTCTTCAACATGCTCAGCAAGAACCCTCTAATACAGGAAAAAGCTTCACAAGAAGTTAGGGATGTTGTCGGTCTGAATCATGAAGCTAATGTCGATGAATTTGTGGCCAGTATAACTGATGCAACTCTTGAACAAATGCATTATCTTCATGCAACACTAACAGAGACCTTGAGGCTATACCCTGCAGTTCCTGTGGATGGTAGACATGCAAAGATAGATGACATTCTTCCTGATGGTTTTAAAGTGAAAAAAGGAGATGGAGTATACTATATGGCCTATGCCATGGGCAGGATGCCTTATATTTGGGGAAAAGATGCAGACGATTTCCGACCTGAAAGATGGCTCAAGGATGGAATTTTCCAGGCTGAATCACCTTTCAAATTTGTCGCTTTTCATGCTGGTCCTCGGATCTGTCTAGGGAAGGACTTTGCCTACCGGCAGATGAAGATAGTAGCAATGGCTCTTCTTTACTTCTTCCGCTTCAAATTGGCCGATGAAGGAAAAGAAGTTAACTACAGGACCACGTTCACCCTTCACATTGATGGCAGTCTCCCCATGCTTGCAGTTCGAAGGACAATGGACTCATACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

404

Amino Acids

46.58

Weight (kDa)

7.63

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 6 - 380 1.8e-73 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 314, 823, 885
AciI CCGC 2 cut(s) 390, 1099
AclWI GGATC 2 cut(s) 338, 1037
AcoI YGGCCR 3 cut(s) 466, 726, 1110
AcsI RAATTY 5 cut(s) 290, 574, 719, 975, 1001
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 818, 909
AgsI TTSAA 7 cut(s) 174, 232, 361, 628, 752, 1000, 1105
AjnI CCWGG 2 cut(s) 89, 981
AluBI AGCT 6 cut(s) 67, 75, 111, 464, 665, 707
AluI AGCT 6 cut(s) 67, 75, 111, 464, 665, 707
Alw26I GTCTC 3 cut(s) 505, 779, 1175
AlwI GGATC 2 cut(s) 338, 1037
AlwNI CAGNNNCTG 1 cut(s) 812
AoxI GGCC 6 cut(s) 300, 387, 466, 726, 894, 1110
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 5 cut(s) 290, 574, 719, 975, 1001
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 2 cut(s) 1022, 1140
AsuHPI GGTGA 5 cut(s) 157, 422, 491, 984, 1141
AsuII TTCGAA 1 cut(s) 1189
AsuNHI GCTAGC 1 cut(s) 460
AvaII GGWCC 2 cut(s) 1022, 1140
BalI TGGCCA 2 cut(s) 468, 728
BbvI GCAGC 1 cut(s) 121
BccI CCATC 7 cut(s) 32, 812, 848, 872, 954, 965, 1157
BciT130I CCWGG 2 cut(s) 91, 983
BcoDI GTCTC 3 cut(s) 505, 779, 1175
BfaI CTAG 2 cut(s) 461, 1037
BfmI CTRYAG 2 cut(s) 804, 1135
BfoI RGCGCY 1 cut(s) 337
BisI GCNGC 2 cut(s) 135, 390
BlpI GCTNAGC 1 cut(s) 635
BlsI GCNGC 2 cut(s) 136, 391
Bme1390I CCNGG 2 cut(s) 91, 983
Bme18I GGWCC 2 cut(s) 1022, 1140
BmgT120I GGNCC 2 cut(s) 1022, 1140
BmrFI CCNGG 2 cut(s) 91, 983
BmsI GCATC 3 cut(s) 730, 903, 925
BmtI GCTAGC 1 cut(s) 464
Bpu1102I GCTNAGC 1 cut(s) 635
Bpu14I TTCGAA 1 cut(s) 1189
BpuEI CTTGAG 2 cut(s) 811, 950
BsaAI YACGTR 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 4 cut(s) 90, 216, 903, 1025
BsaXI ACNNNNNCTCC 2 cut(s) 867, 897
Bsc4I CCNNNNNNNGG 2 cut(s) 818, 909
Bse118I RCCGGY 1 cut(s) 1056
Bse1I ACTGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 1083
BseBI CCWGG 2 cut(s) 91, 983
BseDI CCNNGG 4 cut(s) 90, 216, 903, 1025
BseGI GGATG 4 cut(s) 688, 823, 918, 976
BseLI CCNNNNNNNGG 2 cut(s) 818, 909
BseMI GCAATG 1 cut(s) 1083
BseMII CTCAG 2 cut(s) 375, 649
BseNI ACTGG 1 cut(s) 729
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 587
BshFI GGCC 6 cut(s) 302, 389, 468, 728, 896, 1112
BsiSI CCGG 1 cut(s) 1057
BslI CCNNNNNNNGG 2 cut(s) 818, 909
BsmAI GTCTC 3 cut(s) 505, 779, 1175
BsnI GGCC 6 cut(s) 302, 389, 468, 728, 896, 1112
Bso31I GGTCTC 1 cut(s) 779
Bsp119I TTCGAA 1 cut(s) 1189
Bsp143I GATC 2 cut(s) 343, 1029
Bsp1720I GCTNAGC 1 cut(s) 635
Bsp19I CCATGG 2 cut(s) 216, 903
BspACI CCGC 2 cut(s) 390, 1099
BspANI GGCC 6 cut(s) 302, 389, 468, 728, 896, 1112
BspCNI CTCAG 2 cut(s) 376, 648
BspHI TCATGA 2 cut(s) 294, 700
BspMAI CTGCAG 1 cut(s) 808
BspOI GCTAGC 1 cut(s) 464
BspPI GGATC 2 cut(s) 338, 1037
BspQI GCTCTTC 1 cut(s) 1089
BspT104I TTCGAA 1 cut(s) 1189
BspTNI GGTCTC 1 cut(s) 779
BsrDI GCAATG 1 cut(s) 1083
BsrFI RCCGGY 1 cut(s) 1056
BsrI ACTGG 1 cut(s) 729
BssAI RCCGGY 1 cut(s) 1056
BssECI CCNNGG 4 cut(s) 90, 216, 903, 1025
BssMI GATC 2 cut(s) 343, 1029
BssNAI GTATAC 1 cut(s) 886
BssT1I CCWWGG 2 cut(s) 216, 903
Bst1107I GTATAC 1 cut(s) 886
Bst2UI CCWGG 2 cut(s) 91, 983
Bst4CI ACNGT 1 cut(s) 507
Bst6I CTCTTC 1 cut(s) 1089
BstAPI GCANNNNNTGC 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 1189
BstC8I GCNNGC 5 cut(s) 69, 73, 462, 466, 1182
BstDEI CTNAG 3 cut(s) 98, 384, 635
BstDSI CCRYGG 2 cut(s) 216, 903
BstF5I GGATG 4 cut(s) 688, 823, 918, 976
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 2 cut(s) 346, 1032
BstMAI GTCTC 3 cut(s) 505, 779, 1175
BstMBI GATC 2 cut(s) 343, 1029
BstMWI GCNNNNNNNGC 2 cut(s) 199, 1016
BstNI CCWGG 2 cut(s) 91, 983
BstNSI RCATGY 2 cut(s) 634, 830
BstSCI CCNGG 2 cut(s) 89, 981
BstSFI CTRYAG 2 cut(s) 804, 1135
BstV1I GCAGC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 1029
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 1 cut(s) 1029
BstZ17I GTATAC 1 cut(s) 886
BsuRI GGCC 6 cut(s) 302, 389, 468, 728, 896, 1112
BtgI CCRYGG 2 cut(s) 216, 903
BtsCI GGATG 4 cut(s) 688, 823, 918, 976
Cac8I GCNNGC 5 cut(s) 69, 73, 462, 466, 1182
CaiI CAGNNNCTG 1 cut(s) 812
CciI TCATGA 2 cut(s) 294, 700
CfoI GCGC 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 1056
Cfr13I GGNCC 2 cut(s) 1022, 1140
Csp6I GTAC 1 cut(s) 213
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 3 cut(s) 98, 384, 635
DpnI GATC 2 cut(s) 345, 1031
DpnII GATC 2 cut(s) 343, 1029
DraI TTTAAA 1 cut(s) 862
EaeI YGGCCR 3 cut(s) 466, 726, 1110
Eam1104I CTCTTC 1 cut(s) 1089
EarI CTCTTC 1 cut(s) 1089
Eco130I CCWWGG 2 cut(s) 216, 903
Eco147I AGGCCT 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 779
Eco47I GGWCC 2 cut(s) 1022, 1140
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 89, 981
EcoT14I CCWWGG 2 cut(s) 216, 903
EcoT22I ATGCAT 1 cut(s) 762
ErhI CCWWGG 2 cut(s) 216, 903
FblI GTMKAC 3 cut(s) 314, 823, 885
Fnu4HI GCNGC 2 cut(s) 135, 390
FokI GGATG 4 cut(s) 695, 830, 925, 983
Fsp4HI GCNGC 2 cut(s) 135, 390
FspBI CTAG 2 cut(s) 461, 1037
GlaI GCGC 1 cut(s) 335
GluI GCNGC 2 cut(s) 135, 390
GsaI CCCAGC 1 cut(s) 591
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 6 cut(s) 302, 389, 468, 728, 896, 1112
HapII CCGG 1 cut(s) 1057
HhaI GCGC 1 cut(s) 336
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HincII GTYRAC 2 cut(s) 315, 1132
HindII GTYRAC 2 cut(s) 315, 1132
HindIII AAGCTT 2 cut(s) 65, 663
HinfI GANTC 7 cut(s) 170, 221, 311, 529, 697, 989, 1202
HpaI GTTAAC 1 cut(s) 1132
HpaII CCGG 1 cut(s) 1057
HphI GGTGA 5 cut(s) 157, 422, 491, 984, 1141
Hpy166II GTNNAC 7 cut(s) 213, 315, 430, 824, 886, 1132, 1149
Hpy188I TCNGA 6 cut(s) 169, 385, 573, 696, 950, 1029
Hpy188III TCNNGA 7 cut(s) 295, 352, 442, 533, 701, 749, 851
Hpy8I GTNNAC 7 cut(s) 213, 315, 430, 824, 886, 1132, 1149
HpyAV CCTTC 7 cut(s) 260, 275, 292, 1036, 1112, 1163, 1185
HpyCH4III ACNGT 1 cut(s) 507
HpyCH4IV ACGT 2 cut(s) 418, 1145
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 1016
HpyF3I CTNAG 3 cut(s) 98, 384, 635
HpySE526I ACGT 2 cut(s) 418, 1145
HspAI GCGC 1 cut(s) 334
KspAI GTTAAC 1 cut(s) 1132
Kzo9I GATC 2 cut(s) 343, 1029
LguI GCTCTTC 1 cut(s) 1089
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 3 cut(s) 730, 903, 925
MaeI CTAG 2 cut(s) 461, 1037
MaeII ACGT 2 cut(s) 418, 1145
MalI GATC 2 cut(s) 345, 1031
MboI GATC 2 cut(s) 343, 1029
MboII GAAGA 7 cut(s) 138, 616, 758, 839, 1076, 1078, 1087
MflI RGATCY 1 cut(s) 1029
MlsI TGGCCA 2 cut(s) 468, 728
MluNI TGGCCA 2 cut(s) 468, 728
MlyI GAGTC 2 cut(s) 320, 1196
MmeI TCCRAC 2 cut(s) 495, 973
Mox20I TGGCCA 2 cut(s) 468, 728
Mph1103I ATGCAT 1 cut(s) 762
MscI TGGCCA 2 cut(s) 468, 728
MseI TTAA 5 cut(s) 30, 396, 557, 861, 1131
MslI CAYNNNNRTG 3 cut(s) 480, 616, 1161
Msp20I TGGCCA 2 cut(s) 468, 728
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 1 cut(s) 1057
MspR9I CCNGG 2 cut(s) 91, 983
MvaI CCWGG 2 cut(s) 91, 983
MwoI GCNNNNNNNGC 2 cut(s) 199, 1016
NcoI CCATGG 2 cut(s) 216, 903
NdeII GATC 2 cut(s) 343, 1029
NheI GCTAGC 1 cut(s) 460
NsiI ATGCAT 1 cut(s) 762
NspI RCATGY 2 cut(s) 634, 830
NspV TTCGAA 1 cut(s) 1189
PagI TCATGA 2 cut(s) 294, 700
PceI AGGCCT 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 1089
PfeI GAWTC 5 cut(s) 170, 221, 529, 697, 989
PflFI GACNNNGTC 1 cut(s) 497
PkrI GCNGC 2 cut(s) 136, 391
PleI GAGTC 2 cut(s) 319, 1196
PpsI GAGTC 2 cut(s) 319, 1196
Ppu21I YACGTR 1 cut(s) 419
Psp6I CCWGG 2 cut(s) 89, 981
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 2 cut(s) 89, 981
PspPI GGNCC 2 cut(s) 1022, 1140
PstI CTGCAG 1 cut(s) 808
PstNI CAGNNNCTG 1 cut(s) 812
PsuI RGATCY 1 cut(s) 1029
PsyI GACNNNGTC 1 cut(s) 497
PvuII CAGCTG 1 cut(s) 111
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 3 cut(s) 480, 616, 1161
SalI GTCGAC 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 1089
SaqAI TTAA 5 cut(s) 30, 396, 557, 861, 1131
SatI GCNGC 2 cut(s) 135, 390
Sau3AI GATC 2 cut(s) 343, 1029
Sau96I GGNCC 2 cut(s) 1022, 1140
SchI GAGTC 2 cut(s) 320, 1196
ScrFI CCNGG 2 cut(s) 91, 983
SfaNI GCATC 3 cut(s) 730, 903, 925
SfcI CTRYAG 2 cut(s) 804, 1135
SfuI TTCGAA 1 cut(s) 1189
SinI GGWCC 2 cut(s) 1022, 1140
SmiMI CAYNNNNRTG 3 cut(s) 480, 616, 1161
SmlI CTYRAG 2 cut(s) 790, 965
SmoI CTYRAG 2 cut(s) 790, 965
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 2 cut(s) 390, 1099
SspI AATATT 1 cut(s) 554
SspMI CTAG 2 cut(s) 461, 1037
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 2 cut(s) 89, 981
StyI CCWWGG 2 cut(s) 216, 903
TaaI ACNGT 1 cut(s) 507
TaiI ACGT 2 cut(s) 421, 1148
TaqI TCGA 3 cut(s) 314, 714, 1189
TaqII GACCGA 1 cut(s) 680
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 5 cut(s) 170, 221, 529, 697, 989
Tru1I TTAA 5 cut(s) 30, 396, 557, 861, 1131
Tru9I TTAA 5 cut(s) 30, 396, 557, 861, 1131
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 9 cut(s) 283, 311, 557, 717, 732, 758, 1004, 1079, 1131
Tth111I GACNNNGTC 1 cut(s) 497
VpaK11BI GGWCC 2 cut(s) 1022, 1140
XapI RAATTY 5 cut(s) 290, 574, 719, 975, 1001
XceI RCATGY 2 cut(s) 634, 830
XmiI GTMKAC 3 cut(s) 314, 823, 885
XspI CTAG 2 cut(s) 461, 1037
Zsp2I ATGCAT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.