Rh1BG200100

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000330
Physical Location & Seq
Reverse (-)
31623056 .. 31624494
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG200100.1

Sequence Viewer

Length: 198 bp
ATGTCTGAGATTTTGGGACAGGGCATTTTTGTTGTTAATGGAGAGAAATGCAGGCAGCAGAGGAAGCTTGCTAGCTTTGAGTTCTCAACAAGGAATCTTGTTAGAGTTGTTTTTGAGTTTTTGGATTCCAAAAGGGTCTTTGATATGCAGAATTTACAAATGAGAAAGAAGAAACGTTGGCCAACGTTTGCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

65

Amino Acids

7.8

Weight (kDa)

10.59

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 175, 185
AcoI YGGCCR 1 cut(s) 179
AcsI RAATTY 1 cut(s) 151
AluBI AGCT 2 cut(s) 67, 75
AluI AGCT 2 cut(s) 67, 75
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 151
AsuNHI GCTAGC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 181
BbvI GCAGC 1 cut(s) 67
BfaI CTAG 1 cut(s) 72
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
BmtI GCTAGC 1 cut(s) 75
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 181
BslFI GGGAC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 1 cut(s) 181
BspANI GGCC 1 cut(s) 181
BspOI GCTAGC 1 cut(s) 75
BstC8I GCNNGC 3 cut(s) 53, 69, 73
BstDEI CTNAG 2 cut(s) 6, 192
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 181
Cac8I GCNNGC 3 cut(s) 53, 69, 73
CviJI RGCY 3 cut(s) 67, 75, 181
CviKI_1 RGCY 3 cut(s) 67, 75, 181
DdeI CTNAG 2 cut(s) 6, 192
EaeI YGGCCR 1 cut(s) 179
FaiI YATR 1 cut(s) 146
FaqI GGGAC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 72
GluI GCNGC 1 cut(s) 56
HaeIII GGCC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 2 cut(s) 94, 125
Hpy188I TCNGA 1 cut(s) 7
HpyCH4IV ACGT 2 cut(s) 175, 185
HpyCH4V TGCA 2 cut(s) 51, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 6, 192
HpySE526I ACGT 2 cut(s) 175, 185
LpnPI CCDG 2 cut(s) 5, 37
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 72
MaeII ACGT 2 cut(s) 175, 185
MboII GAAGA 1 cut(s) 181
MlsI TGGCCA 1 cut(s) 181
MluCI AATT 1 cut(s) 151
MluNI TGGCCA 1 cut(s) 181
MnlI CCTC 1 cut(s) 54
Mox20I TGGCCA 1 cut(s) 181
MscI TGGCCA 1 cut(s) 181
MseI TTAA 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 64
NheI GCTAGC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 94, 125
PkrI GCNGC 1 cut(s) 57
Psp1406I AACGTT 2 cut(s) 175, 185
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 56
SetI ASST 4 cut(s) 69, 77, 178, 188
SgeI CNNG 6 cut(s) 32, 64, 80, 84, 102, 110
Sse9I AATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 72
TaiI ACGT 2 cut(s) 178, 188
TasI AATT 1 cut(s) 151
TfiI GAWTC 2 cut(s) 94, 125
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseI GCWGC 1 cut(s) 55
XapI RAATTY 1 cut(s) 151
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.