Rmu_sc0000429.1_g000085

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000429.1
OG0000330
Physical Location & Seq
Forward (+)
404100 .. 404574
475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000429.1_g000085.1.cds

Sequence Viewer

Length: 339 bp
atggtggcataccaaccttatgccatgggcaggatgaagtttctatggggtgatgaagcagaagagtttcggccagagagatggcttgatgaaaatggcattttccagccagaaagccctttcaaattcacggccttccaggctggtcccagaatttgcctaggaaaagaatttgcttatagggagatgaagatcttttctgctgtgcttttaggcaactacatattcaagctggccgaaaagaaaacaggggtcagctacaggaccatgatcaacctccatattgatgggggactttacgttcttgccgctccaagattgaagcttgaaagatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

112

Amino Acids

13.01

Weight (kDa)

9.07

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 311
AciI CCGC 1 cut(s) 309
AcoI YGGCCR 2 cut(s) 71, 234
AcsI RAATTY 3 cut(s) 125, 153, 170
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 4 cut(s) 124, 229, 322, 329
AjnI CCWGG 1 cut(s) 138
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
AluBI AGCT 3 cut(s) 232, 258, 325
AluI AGCT 3 cut(s) 232, 258, 325
AoxI GGCC 3 cut(s) 71, 132, 234
ApoI RAATTY 3 cut(s) 125, 153, 170
Asp700I GAANNNNTTC 1 cut(s) 66
AspA2I CCTAGG 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 146, 264
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 2 cut(s) 146, 264
AvrII CCTAGG 1 cut(s) 160
BccI CCATC 2 cut(s) 75, 281
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 140
BclI TGATCA 1 cut(s) 270
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 259
BglI GCCNNNNNGGC 1 cut(s) 140
BglII AGATCT 2 cut(s) 192, 332
BisI GCNGC 1 cut(s) 309
BlnI CCTAGG 1 cut(s) 160
BlsI GCNGC 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 2 cut(s) 146, 264
BmgT120I GGNCC 2 cut(s) 146, 264
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 24, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 191
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 24, 160
BseGI GGATG 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 30
BshFI GGCC 3 cut(s) 73, 134, 236
BslFI GGGAC 2 cut(s) 132, 306
BslI CCNNNNNNNGG 1 cut(s) 30
BsmFI GGGAC 2 cut(s) 132, 306
BsnI GGCC 3 cut(s) 73, 134, 236
Bsp143I GATC 3 cut(s) 192, 270, 332
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 1 cut(s) 309
BspANI GGCC 3 cut(s) 73, 134, 236
BspLI GGNNCC 1 cut(s) 148
BsrBI CCGCTC 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 24, 160
BssMI GATC 3 cut(s) 192, 270, 332
BssT1I CCWWGG 2 cut(s) 24, 160
Bst2UI CCWGG 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 39
BstKTI GATC 3 cut(s) 195, 273, 335
BstMBI GATC 3 cut(s) 192, 270, 332
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 259
BstX2I RGATCY 2 cut(s) 192, 332
BstXI CCANNNNNNTGG 2 cut(s) 81, 287
BstYI RGATCY 2 cut(s) 192, 332
BsuRI GGCC 3 cut(s) 73, 134, 236
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 234
Cfr13I GGNCC 2 cut(s) 146, 264
CviAII CATG 2 cut(s) 25, 268
DdeI CTNAG 1 cut(s) 336
DpnI GATC 3 cut(s) 194, 272, 334
DpnII GATC 3 cut(s) 192, 270, 332
EaeI YGGCCR 2 cut(s) 71, 234
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 2 cut(s) 24, 160
Eco47I GGWCC 2 cut(s) 146, 264
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 2 cut(s) 24, 160
ErhI CCWWGG 2 cut(s) 24, 160
FaeI CATG 2 cut(s) 28, 271
FaiI YATR 8 cut(s) 10, 21, 26, 46, 180, 224, 269, 282
FaqI GGGAC 2 cut(s) 132, 306
FatI CATG 2 cut(s) 24, 267
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 309
HaeIII GGCC 3 cut(s) 73, 134, 236
Hin1II CATG 2 cut(s) 28, 271
HindIII AAGCTT 1 cut(s) 323
HphI GGTGA 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 2 cut(s) 28, 271
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 3 cut(s) 192, 270, 332
LmnI GCTCC 1 cut(s) 316
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 300
MalI GATC 3 cut(s) 194, 272, 334
MbiI CCGCTC 1 cut(s) 311
MboI GATC 3 cut(s) 192, 270, 332
MboII GAAGA 2 cut(s) 74, 202
MflI RGATCY 2 cut(s) 192, 332
MluCI AATT 3 cut(s) 125, 153, 170
MnlI CCTC 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 140
NcoI CCATGG 1 cut(s) 24
NdeII GATC 3 cut(s) 192, 270, 332
NlaIII CATG 2 cut(s) 28, 271
NlaIV GGNNCC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 146, 264
PsuI RGATCY 2 cut(s) 192, 332
RseI CAYNNNNRTG 1 cut(s) 285
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 3 cut(s) 192, 270, 332
Sau96I GGNCC 2 cut(s) 146, 264
ScrFI CCNGG 1 cut(s) 140
SetI ASST 6 cut(s) 19, 234, 260, 279, 303, 327
SfcI CTRYAG 1 cut(s) 259
SinI GGWCC 2 cut(s) 146, 264
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 3 cut(s) 125, 153, 170
SsiI CCGC 1 cut(s) 309
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 2 cut(s) 24, 160
TaiI ACGT 1 cut(s) 303
TasI AATT 3 cut(s) 125, 153, 170
TauI GCSGC 1 cut(s) 311
TspDTI ATGAA 4 cut(s) 50, 69, 105, 203
VpaK11BI GGWCC 2 cut(s) 146, 264
XapI RAATTY 3 cut(s) 125, 153, 170
XmaJI CCTAGG 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.