RchiOBHm_Chr1g0375431

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000330
Physical Location & Seq
Forward (+)
62831573 .. 62832670
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59915

Sequence Viewer

Length: 237 bp
ATGGGCAGGATGAAATTTCTGTGGGGTGATGATGCAGAGGAGTTTAGGCCAGAGAGATGGCTCGACCATAAAGGCCTTTTCGAGCAAGAAAGCCCTTTTAAGTTCACAGCCTTCCAGGCAGGTCCAAGAATCTGTCTAGGAAAGGAATTCGCTTATAGACAGATGAAGATCTTTTCGGCTATTCTTTTAGGCAACTACATATTCAAGATGAGTGCTGAAGTAAGTGGTAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

78

Amino Acids

9.14

Weight (kDa)

8.85

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 73 6e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 110
AcsI RAATTY 2 cut(s) 14, 146
AcuI CTGAAG 1 cut(s) 237
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 114
AoxI GGCC 2 cut(s) 47, 73
ApoI RAATTY 2 cut(s) 14, 146
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 122
BccI CCATC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 116
BfaI CTAG 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 167
BseBI CCWGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 15
BseJI GATNNNNATC 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 53
BshFI GGCC 2 cut(s) 49, 75
BsnI GGCC 2 cut(s) 49, 75
Bsp143I GATC 1 cut(s) 168
BspANI GGCC 2 cut(s) 49, 75
BspMI ACCTGC 1 cut(s) 110
BssMI GATC 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 57
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 2 cut(s) 49, 75
BtsCI GGATG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 122
CviJI RGCY 6 cut(s) 49, 61, 75, 93, 110, 179
CviKI_1 RGCY 6 cut(s) 49, 61, 75, 93, 110, 179
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 114
FaiI YATR 4 cut(s) 69, 156, 200, 235
FokI GGATG 1 cut(s) 22
FspBI CTAG 1 cut(s) 137
HaeIII GGCC 2 cut(s) 49, 75
HinfI GANTC 1 cut(s) 129
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Kzo9I GATC 1 cut(s) 168
LpnPI CCDG 4 cut(s) 63, 101, 105, 128
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 137
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 1 cut(s) 178
MflI RGATCY 1 cut(s) 168
MluCI AATT 3 cut(s) 14, 146, 230
MnlI CCTC 1 cut(s) 31
MseI TTAA 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 1 cut(s) 168
PceI AGGCCT 1 cut(s) 75
PfeI GAWTC 1 cut(s) 129
PsiI TTATAA 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 168
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 116
SetI ASST 1 cut(s) 124
SfaNI GCATC 1 cut(s) 22
SinI GGWCC 1 cut(s) 122
Sse9I AATT 3 cut(s) 14, 146, 230
SseBI AGGCCT 1 cut(s) 75
SspMI CTAG 1 cut(s) 137
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 114
TaqI TCGA 2 cut(s) 63, 81
TasI AATT 3 cut(s) 14, 146, 230
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 26, 179
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 2 cut(s) 14, 146
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.