Rroxscaffold_4G00304180

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000330
Physical Location & Seq
Reverse (-)
24896964 .. 24897384
421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00304180.1

Sequence Viewer

Length: 342 bp
ATGTCTACTCGATTTCAACTTCGATACTGTACATTTATTGAAGTTAAGGTCAATGCATCTAATTTCATACAAGGCACCGTGAATGACTCGATTGATATGTTTGTGTCTTTGGCTTTAAAGATGGGAGATGTGCGAGAGAAGGATGACATTCTTCCCGATGGCTTTAGACCGAAAAAAGGAGACGGAATAAACTACATGGCATATTCCATGGGGGGAGTGCCTTATATTTGGGGACAAGATGCCGAGGATTTCAGACCTGAAATATGGCTCAACAATGGAGTTTTCCAGCCGAATCAACTTTCAAATTTGTCACATTTCATGCAGGCCCTCGGATCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

113

Amino Acids

12.81

Weight (kDa)

4.93

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 304
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 3 cut(s) 17, 41, 303
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 1 cut(s) 340
AoxI GGCC 1 cut(s) 324
ApoI RAATTY 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 74
BccI CCATC 2 cut(s) 115, 152
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 2 cut(s) 65, 229
BsaJI CCNNGG 3 cut(s) 207, 243, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 176
BseDI CCNNGG 3 cut(s) 207, 243, 328
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 176
BshFI GGCC 1 cut(s) 326
BshNI GGYRCC 1 cut(s) 74
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 1 cut(s) 326
Bsp1407I TGTACA 1 cut(s) 29
Bsp143I GATC 1 cut(s) 332
Bsp19I CCATGG 1 cut(s) 207
BspANI GGCC 1 cut(s) 326
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 29
BssECI CCNNGG 3 cut(s) 207, 243, 328
BssMI GATC 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 29, 79
BstAUI TGTACA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 324
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 1 cut(s) 335
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuRI GGCC 1 cut(s) 326
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 30
CviAII CATG 3 cut(s) 196, 208, 319
CviJI RGCY 5 cut(s) 113, 162, 268, 289, 326
CviKI_1 RGCY 5 cut(s) 113, 162, 268, 289, 326
CviQI GTAC 1 cut(s) 30
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
DraI TTTAAA 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 3 cut(s) 199, 211, 322
FaiI YATR 8 cut(s) 68, 98, 197, 202, 209, 225, 265, 320
FaqI GGGAC 1 cut(s) 246
FatI CATG 3 cut(s) 195, 207, 318
FblI GTMKAC 1 cut(s) 5
FokI GGATG 1 cut(s) 155
FspBI CTAG 1 cut(s) 340
HaeIII GGCC 1 cut(s) 326
Hin1II CATG 3 cut(s) 199, 211, 322
HinfI GANTC 2 cut(s) 86, 292
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 254, 332
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 29, 79
HpyCH4V TGCA 2 cut(s) 56, 322
Hsp92II CATG 3 cut(s) 199, 211, 322
Kzo9I GATC 1 cut(s) 332
LpnPI CCDG 3 cut(s) 270, 299, 308
LweI GCATC 2 cut(s) 65, 229
MaeI CTAG 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 309
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MboII GAAGA 1 cut(s) 143
MflI RGATCY 1 cut(s) 332
MluCI AATT 2 cut(s) 61, 304
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 2 cut(s) 238, 338
Mph1103I ATGCAT 1 cut(s) 58
MseI TTAA 2 cut(s) 45, 116
NcoI CCATGG 1 cut(s) 207
NdeII GATC 1 cut(s) 332
NlaIII CATG 3 cut(s) 199, 211, 322
NlaIV GGNNCC 1 cut(s) 76
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 309
NsiI ATGCAT 1 cut(s) 58
PfeI GAWTC 1 cut(s) 292
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 325
PsuI RGATCY 1 cut(s) 332
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 45, 116
Sau3AI GATC 1 cut(s) 332
Sau96I GGNCC 1 cut(s) 325
SchI GAGTC 1 cut(s) 80
SetI ASST 2 cut(s) 51, 259
SfaNI GCATC 2 cut(s) 65, 229
Sse9I AATT 2 cut(s) 61, 304
SspMI CTAG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 29, 79
TaqI TCGA 3 cut(s) 10, 22, 89
TaqII GACCGA 1 cut(s) 184
TasI AATT 2 cut(s) 61, 304
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 45, 116
Tru9I TTAA 2 cut(s) 45, 116
TseFI GTSAC 1 cut(s) 309
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 2 cut(s) 55, 307
TspGWI ACGGA 1 cut(s) 198
XapI RAATTY 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 340
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.