Rmu_sc0006458.1_g000011

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006458.1
OG0000330
Physical Location & Seq
Reverse (-)
50501 .. 51373
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006458.1_g000011.1.cds

Sequence Viewer

Length: 597 bp
atggaaagcggaaaggagccagaggaaatgactgataagtatctaagggatataactctgaattttatgtttgctggcaaagattccagtggaactacactctcgtggttcttctacatgctgtgcaaaaaccctctcattcaagaaaaggttgcacaagaagtgagggatgtagttggtctgaaccacaaagctaacatcgacgagtttgtggcaaatttaactgatgcagctcttgaaagaatgcattatcttcatgcagcactgacagagaccttgaggctataccctgcagttcctgtggatgggagagctgcagagacagatgacattcttcctgatggatacagagtaagaaaaggtgatggagtgttctacatggcctatgccatgggcagaatgccttatatatggggagaagatgctgaggattttcgacctgaaagatggctcaaaaatggaattttccagcctgaatcttctttcaaattcgtctcatttcatgttggctggtcctcggatttgtatagggaaggactttgcttaccggcagatgaagatagtatcaatggcacttctgtgctactttcgctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

198

Amino Acids

22.56

Weight (kDa)

4.74

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AcsI RAATTY 4 cut(s) 61, 217, 462, 488
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 3 cut(s) 143, 239, 487
AleI CACNNNNGTG 2 cut(s) 103, 578
AluBI AGCT 3 cut(s) 194, 233, 314
AluI AGCT 3 cut(s) 194, 233, 314
Alw26I GTCTC 3 cut(s) 266, 314, 499
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 3 cut(s) 230, 260, 314
ApoI RAATTY 4 cut(s) 61, 217, 462, 488
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 1 cut(s) 374
AvaII GGWCC 1 cut(s) 513
BauI CACGAG 1 cut(s) 103
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 242, 272, 301
BccI CCATC 4 cut(s) 299, 335, 359, 441
BciVI GTATCC 1 cut(s) 338
BcoDI GTCTC 3 cut(s) 266, 314, 499
BfmI CTRYAG 2 cut(s) 291, 315
BfuI GTATCC 1 cut(s) 338
BisI GCNGC 3 cut(s) 231, 261, 315
BlsI GCNGC 3 cut(s) 232, 262, 316
Bme18I GGWCC 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 513
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 2 cut(s) 217, 412
Bpu10I CCTNAGC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 390, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 390, 516
BseGI GGATG 2 cut(s) 175, 310
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 242, 272, 301
BshFI GGCC 1 cut(s) 383
BsiSI CCGG 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 3 cut(s) 266, 314, 499
BsmBI CGTCTC 1 cut(s) 499
BsmI GAATGC 2 cut(s) 249, 405
BsnI GGCC 1 cut(s) 383
Bso31I GGTCTC 1 cut(s) 266
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 2 cut(s) 295, 319
BspTNI GGTCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 2 cut(s) 390, 516
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 44, 426
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 175, 310
BstMAI GTCTC 3 cut(s) 266, 314, 499
BstMWI GCNNNNNNNGC 1 cut(s) 589
BstNSI RCATGY 1 cut(s) 121
BstSFI CTRYAG 2 cut(s) 291, 315
BstV1I GCAGC 3 cut(s) 242, 272, 301
BsuI GTATCC 1 cut(s) 338
BsuRI GGCC 1 cut(s) 383
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 175, 310
BtsIMutI CAGTG 2 cut(s) 94, 263
Cac8I GCNNGC 1 cut(s) 76
CaiI CAGNNNCTG 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 513
CviAII CATG 5 cut(s) 118, 257, 379, 391, 503
CviJI RGCY 9 cut(s) 19, 194, 233, 283, 314, 383, 451, 472, 510
CviKI_1 RGCY 9 cut(s) 19, 194, 233, 283, 314, 383, 451, 472, 510
DdeI CTNAG 2 cut(s) 44, 426
Eco130I CCWWGG 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 499
FaeI CATG 5 cut(s) 121, 260, 382, 394, 506
FatI CATG 5 cut(s) 117, 256, 378, 390, 502
Fnu4HI GCNGC 3 cut(s) 231, 261, 315
FokI GGATG 2 cut(s) 182, 317
Fsp4HI GCNGC 3 cut(s) 231, 261, 315
GluI GCNGC 3 cut(s) 231, 261, 315
HaeIII GGCC 1 cut(s) 383
HapII CCGG 1 cut(s) 548
Hin1II CATG 5 cut(s) 121, 260, 382, 394, 506
HinfI GANTC 2 cut(s) 83, 476
HpaII CCGG 1 cut(s) 548
HphI GGTGA 1 cut(s) 374
Hpy188I TCNGA 3 cut(s) 60, 183, 520
Hpy188III TCNNGA 3 cut(s) 143, 236, 338
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 527
HpyCH4V TGCA 7 cut(s) 126, 155, 230, 247, 260, 293, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 589
HpyF3I CTNAG 2 cut(s) 44, 426
Hsp92II CATG 5 cut(s) 121, 260, 382, 394, 506
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 3 cut(s) 242, 272, 301
LweI GCATC 2 cut(s) 217, 412
MboII GAAGA 6 cut(s) 103, 245, 326, 431, 471, 569
MluCI AATT 4 cut(s) 61, 217, 462, 488
MnlI CCTC 6 cut(s) 16, 144, 159, 273, 421, 526
Mph1103I ATGCAT 1 cut(s) 249
MseI TTAA 2 cut(s) 221, 595
MslI CAYNNNNRTG 2 cut(s) 103, 578
MspI CCGG 1 cut(s) 548
Mva1269I GAATGC 2 cut(s) 249, 405
MwoI GCNNNNNNNGC 1 cut(s) 589
NcoI CCATGG 1 cut(s) 390
NlaIII CATG 5 cut(s) 121, 260, 382, 394, 506
NlaIV GGNNCC 1 cut(s) 18
NsiI ATGCAT 1 cut(s) 249
NspI RCATGY 1 cut(s) 121
OliI CACNNNNGTG 2 cut(s) 103, 578
PctI GAATGC 2 cut(s) 249, 405
PfeI GAWTC 2 cut(s) 83, 476
PkrI GCNGC 3 cut(s) 232, 262, 316
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 513
PstI CTGCAG 2 cut(s) 295, 319
PstNI CAGNNNCTG 1 cut(s) 299
RseI CAYNNNNRTG 2 cut(s) 103, 578
SaqAI TTAA 2 cut(s) 221, 595
SatI GCNGC 3 cut(s) 231, 261, 315
Sau96I GGNCC 1 cut(s) 513
SetI ASST 7 cut(s) 153, 196, 235, 278, 316, 364, 442
SfaNI GCATC 2 cut(s) 217, 412
SfcI CTRYAG 2 cut(s) 291, 315
SinI GGWCC 1 cut(s) 513
SmiMI CAYNNNNRTG 2 cut(s) 103, 578
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 4 cut(s) 61, 217, 462, 488
SsiI CCGC 1 cut(s) 9
StyI CCWWGG 1 cut(s) 390
TaqI TCGA 2 cut(s) 201, 436
TasI AATT 4 cut(s) 61, 217, 462, 488
TfiI GAWTC 2 cut(s) 83, 476
Tru1I TTAA 2 cut(s) 221, 595
Tru9I TTAA 2 cut(s) 221, 595
TscAI CASTG 2 cut(s) 94, 270
TseI GCWGC 3 cut(s) 230, 260, 314
TspDTI ATGAA 3 cut(s) 245, 491, 570
TspRI CASTG 2 cut(s) 94, 270
VpaK11BI GGWCC 1 cut(s) 513
XapI RAATTY 4 cut(s) 61, 217, 462, 488
XceI RCATGY 1 cut(s) 121
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.