RchiOBHm_Chr1g0350981

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000330
Physical Location & Seq
Forward (+)
44141083 .. 44141380
298 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57680

Sequence Viewer

Length: 204 bp
ATGGGAATATTTGTTGTTGATGGAGAGAAATGGAAGCAGCAGAGGAAGCTTGCCAGTTTTGAGTTTTCGACGAGAGTTCTCAGGGACTTCAGTTGTTCTGTTTTCAGAAGAAATGGTGCTAAATGGGTCAAAGTTATTTCTGAGTACTCTGTTGCAAATGGAGTTTTTGATATGCAGGCCAGTCACTTTTCTTCTTGGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

67

Amino Acids

7.77

Weight (kDa)

9.74

Isoelectric Point (pI)

23.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 1 cut(s) 146
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 14
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
BmcAI AGTACT 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 54, 180
BseMII CTCAG 2 cut(s) 94, 132
BseNI ACTGG 2 cut(s) 54, 180
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 179
BslFI GGGAC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 1 cut(s) 179
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 93, 133
BsrI ACTGG 2 cut(s) 54, 180
BstC8I GCNNGC 2 cut(s) 51, 177
BstDEI CTNAG 2 cut(s) 80, 141
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 51, 177
Csp6I GTAC 1 cut(s) 145
CviJI RGCY 2 cut(s) 49, 179
CviKI_1 RGCY 2 cut(s) 49, 179
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 2 cut(s) 80, 141
Eco57I CTGAAG 1 cut(s) 73
FaiI YATR 2 cut(s) 173, 202
FaqI GGGAC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 107, 142
Hpy99I CGWCG 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 155, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 2 cut(s) 80, 141
LpnPI CCDG 4 cut(s) 67, 67, 161, 193
Lsp1109I GCAGC 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 2 cut(s) 120, 183
MnlI CCTC 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 39
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SatI GCNGC 1 cut(s) 38
ScaI AGTACT 1 cut(s) 146
SetI ASST 1 cut(s) 51
SgeI CNNG 6 cut(s) 62, 66, 84, 94, 188, 192
SspI AATATT 1 cut(s) 9
TaqI TCGA 1 cut(s) 68
TatI WGTACW 1 cut(s) 144
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.