RchiOBHm_Chr1g0351091

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000330
Physical Location & Seq
Forward (+)
44297577 .. 44300253
2677 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57689

Sequence Viewer

Length: 1458 bp
ATGGGGTTTCTCTATCTCCTCCTCACCCTCACACTTTCGTCACTCTTCCTCTTCCTAGCCTTCGTCTCGTTTCTCATACTCAAACTCTACACAGGCAAGTCCATCAAAGACCCAAACTACCCCCCTGTAAAGGGCACCGTCTTCCACCAGCTCTTATATTTCAACAAACTCTACGGCCACGAAGCCGAAGTCGCCAGAGAAAACCCTACTTACAGGCTACTGGCGGTGGACCACAGCGCCATATATACGTGTGACCCAGGAAACATTGAGCACATGCTCAAAACCAGATTTGCTCATTACACGAAAGGGGAGTATAACCAGACTATTGTGAGAGATGTTTTTGGGCATGGGATTTTTGCTGTGGATGGAGATAAGTGGAGGCAGCAGAGGAAGCTTGCGAGTTTCGAGTTTTCAACCAGGGTTTTGAGGGATTTTAGCTGTTCTGTTTTTAGGAGAAGTGCTGCCAAAATTGTCAGAAAGGTTTTGGAGTTTTCCGAGTCCAGTGAGGTTTTTGATATGCAGGATTTGCTTATGAGATGCACCTTGGATTCCATATTCAGAGTTGGATTTGGTATAGAACTGAGTTGCATGGAGGGTTCAAGCAAAGAAGGGCTAGCATTCATGAAGGCATTTGATGAGTCAACTGCTCTGACCTACTGGCGCTATGTTGATCCATTCTGGAAATTGAAAAGAATTCTTAACATTGGTTCTGAAGCCACCCTTAAAATTTATGTCAAAGTCATTCATGACTTCGTGCACCAACTTATCAGGAGAAAGAGGACATTACTAGCTAGCCAGAAAGATAGTAATAACAGGCAGGACATACTATCACGACTTCTATTGGAGAGCGAGAAGAATCCAGAGGAGATGAATGATAAATATCTAAGTGACATAATTCTGAATTTTATGATTGCTGGGAAAGATACCAGTGCAAATACACTCTCATGGTTCTTCTACATGCTCAGCAAGAACCCTCTAATACAAGAAAAAGTTGCACAAGAAGTGAGGGATGTCGTTGGTCTGAATCATGAAGCCAACATTGATATATTTGTGGCCAATATAACCGATGCAGCTCTTGAAAAAATGCACTATCTTCATGCGGCATTAACAGAGACCTTGAGGCTATACCCAGCAGTTCCTATTGATGGGAGACATGCAGAGGTAGATGACATTCTTCCTGATGGCTTTAGAGTGAAAAAAGGAGACTCAATTAACTACATGAGTTATGCCATGGGCAGAATGCCTTATATTTGGGGAAAGGATGCAGAGGAGTATAGACCTGAAAGATGGCTCAACAATGGAATTTTCCAGCCTGAATCACCATTCAAATTCGTCGCATTTCATGCTGGTCCTCGGATCTGTCTGGGGAAGGACTTTGCTTATCGGCAGATGAAGATAGTAGCAATGGCACTTCTTTGCTTCTTCCGCTTCAAATTGGCTGATGAAACAAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

485

Amino Acids

56.16

Weight (kDa)

8.63

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 61 - 483 7.8e-76 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AciI CCGC 3 cut(s) 224, 1100, 1426
AclWI GGATC 2 cut(s) 665, 1364
AcoI YGGCCR 2 cut(s) 175, 1053
AcsI RAATTY 5 cut(s) 693, 726, 901, 1302, 1328
AcuI CTGAAG 1 cut(s) 732
AfiI CCNNNNNNNGG 3 cut(s) 130, 131, 1145
AflIII ACRYGT 1 cut(s) 248
AgsI TTSAA 7 cut(s) 163, 414, 600, 688, 1079, 1327, 1432
AjnI CCWGG 2 cut(s) 256, 416
AluBI AGCT 5 cut(s) 151, 394, 438, 791, 1073
AluI AGCT 5 cut(s) 151, 394, 438, 791, 1073
Alw21I GWGCWC 2 cut(s) 273, 759
Alw26I GTCTC 4 cut(s) 70, 1106, 1144, 1197
Alw44I GTGCAC 1 cut(s) 755
AlwI GGATC 2 cut(s) 665, 1364
AoxI GGCC 2 cut(s) 175, 1053
ApaLI GTGCAC 1 cut(s) 755
ApeKI GCWGC 3 cut(s) 382, 461, 1070
ApoI RAATTY 5 cut(s) 693, 726, 901, 1302, 1328
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
AspLEI GCGC 2 cut(s) 239, 663
AspS9I GGNCC 2 cut(s) 229, 1349
AsuHPI GGTGA 2 cut(s) 16, 1311
AsuNHI GCTAGC 2 cut(s) 613, 791
AvaII GGWCC 2 cut(s) 229, 1349
BaeGI GKGCMC 2 cut(s) 137, 759
BalI TGGCCA 1 cut(s) 1055
BanI GGYRCC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 2 cut(s) 273, 759
BbvI GCAGC 3 cut(s) 394, 448, 1082
BccI CCATC 5 cut(s) 110, 359, 1139, 1175, 1281
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 2 cut(s) 258, 418
BcoDI GTCTC 4 cut(s) 70, 1106, 1144, 1197
BfaI CTAG 4 cut(s) 56, 614, 788, 792
BfoI RGCGCY 2 cut(s) 240, 664
BisI GCNGC 4 cut(s) 383, 462, 1071, 1101
BlpI GCTNAGC 1 cut(s) 962
BlsI GCNGC 4 cut(s) 384, 463, 1072, 1102
Bme1390I CCNGG 2 cut(s) 258, 418
Bme18I GGWCC 2 cut(s) 229, 1349
BmgT120I GGNCC 2 cut(s) 229, 1349
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 258, 418
BmsI GCATC 3 cut(s) 527, 1057, 1252
BmtI GCTAGC 2 cut(s) 617, 795
BpiI GAAGAC 1 cut(s) 133
Bpu1102I GCTNAGC 1 cut(s) 962
BpuEI CTTGAG 1 cut(s) 1138
BsaAI YACGTR 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 879
BsaI GGTCTC 1 cut(s) 1106
BsaJI CCNNGG 5 cut(s) 256, 417, 543, 1230, 1352
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 131, 1145
Bse1I ACTGG 4 cut(s) 225, 501, 662, 927
Bse3DI GCAATG 1 cut(s) 1410
Bse8I GATNNNNATC 1 cut(s) 879
BseBI CCWGG 2 cut(s) 258, 418
BseDI CCNNGG 5 cut(s) 256, 417, 543, 1230, 1352
BseGI GGATG 3 cut(s) 370, 1015, 1267
BseJI GATNNNNATC 1 cut(s) 879
BseLI CCNNNNNNNGG 3 cut(s) 130, 131, 1145
BseMI GCAATG 1 cut(s) 1410
BseMII CTCAG 2 cut(s) 572, 976
BseNI ACTGG 4 cut(s) 225, 501, 662, 927
BseRI GAGGAG 4 cut(s) 8, 11, 878, 1283
BseSI GKGCMC 2 cut(s) 137, 759
BseXI GCAGC 3 cut(s) 394, 448, 1082
BseYI CCCAGC 2 cut(s) 914, 1129
BshFI GGCC 2 cut(s) 177, 1055
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 2 cut(s) 273, 759
BslI CCNNNNNNNGG 3 cut(s) 130, 131, 1145
BsmAI GTCTC 4 cut(s) 70, 1106, 1144, 1197
BsmBI CGTCTC 1 cut(s) 70
BsmI GAATGC 2 cut(s) 617, 1245
BsnI GGCC 2 cut(s) 177, 1055
Bso31I GGTCTC 1 cut(s) 1106
Bsp1286I GDGCHC 3 cut(s) 137, 273, 759
Bsp143I GATC 2 cut(s) 670, 1356
Bsp1720I GCTNAGC 1 cut(s) 962
Bsp19I CCATGG 1 cut(s) 1230
BspACI CCGC 3 cut(s) 224, 1100, 1426
BspANI GGCC 2 cut(s) 177, 1055
BspCNI CTCAG 2 cut(s) 573, 975
BspHI TCATGA 3 cut(s) 621, 745, 1027
BspLI GGNNCC 1 cut(s) 136
BspOI GCTAGC 2 cut(s) 617, 795
BspPI GGATC 2 cut(s) 665, 1364
BspT107I GGYRCC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 1106
BsrDI GCAATG 1 cut(s) 1410
BsrI ACTGG 4 cut(s) 225, 501, 662, 927
BssECI CCNNGG 5 cut(s) 256, 417, 543, 1230, 1352
BssMI GATC 2 cut(s) 670, 1356
BssT1I CCWWGG 2 cut(s) 543, 1230
Bst2UI CCWGG 2 cut(s) 258, 418
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 50, 56
BstAPI GCANNNNNTGC 2 cut(s) 526, 1343
BstBAI YACGTR 1 cut(s) 249
BstC8I GCNNGC 3 cut(s) 396, 615, 793
BstDEI CTNAG 3 cut(s) 581, 884, 962
BstDSI CCRYGG 1 cut(s) 1230
BstF5I GGATG 3 cut(s) 370, 1015, 1267
BstH2I RGCGCY 2 cut(s) 240, 664
BstHHI GCGC 2 cut(s) 239, 663
BstKTI GATC 2 cut(s) 673, 1359
BstMAI GTCTC 4 cut(s) 70, 1106, 1144, 1197
BstMBI GATC 2 cut(s) 670, 1356
BstMWI GCNNNNNNNGC 5 cut(s) 191, 391, 526, 1343, 1425
BstNI CCWGG 2 cut(s) 258, 418
BstNSI RCATGY 3 cut(s) 277, 961, 1157
BstSCI CCNGG 2 cut(s) 256, 416
BstSLI GKGCMC 2 cut(s) 137, 759
BstV1I GCAGC 3 cut(s) 394, 448, 1082
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 1356
BstYI RGATCY 1 cut(s) 1356
BsuRI GGCC 2 cut(s) 177, 1055
BtgI CCRYGG 1 cut(s) 1230
BtsCI GGATG 3 cut(s) 370, 1015, 1267
BtsIMutI CAGTG 2 cut(s) 508, 934
Cac8I GCNNGC 3 cut(s) 396, 615, 793
CciI TCATGA 3 cut(s) 621, 745, 1027
CfoI GCGC 2 cut(s) 239, 663
Cfr13I GGNCC 2 cut(s) 229, 1349
DdeI CTNAG 3 cut(s) 581, 884, 962
DpnI GATC 2 cut(s) 672, 1358
DpnII GATC 2 cut(s) 670, 1356
EaeI YGGCCR 2 cut(s) 175, 1053
Eam1104I CTCTTC 2 cut(s) 50, 56
EarI CTCTTC 2 cut(s) 50, 56
Eco130I CCWWGG 2 cut(s) 543, 1230
Eco31I GGTCTC 1 cut(s) 1106
Eco47I GGWCC 2 cut(s) 229, 1349
Eco57I CTGAAG 1 cut(s) 732
EcoRI GAATTC 1 cut(s) 693
EcoRII CCWGG 2 cut(s) 256, 416
EcoT14I CCWWGG 2 cut(s) 543, 1230
ErhI CCWWGG 2 cut(s) 543, 1230
Esp3I CGTCTC 1 cut(s) 70
FalI AAGNNNNNCTT 2 cut(s) 705, 737
Fnu4HI GCNGC 4 cut(s) 383, 462, 1071, 1101
FokI GGATG 3 cut(s) 377, 1022, 1274
Fsp4HI GCNGC 4 cut(s) 383, 462, 1071, 1101
FspBI CTAG 4 cut(s) 56, 614, 788, 792
GlaI GCGC 2 cut(s) 238, 662
GluI GCNGC 4 cut(s) 383, 462, 1071, 1101
GsaI CCCAGC 2 cut(s) 918, 1133
HaeII RGCGCY 2 cut(s) 240, 664
HaeIII GGCC 2 cut(s) 177, 1055
HhaI GCGC 2 cut(s) 239, 663
Hin6I GCGC 2 cut(s) 237, 661
HinP1I GCGC 2 cut(s) 237, 661
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 7 cut(s) 497, 548, 638, 856, 1024, 1205, 1316
HphI GGTGA 2 cut(s) 16, 1311
Hpy166II GTNNAC 3 cut(s) 229, 642, 757
Hpy188I TCNGA 8 cut(s) 476, 496, 560, 651, 712, 900, 1023, 1356
Hpy188III TCNNGA 9 cut(s) 622, 679, 746, 769, 831, 860, 1028, 1076, 1178
Hpy8I GTNNAC 3 cut(s) 229, 642, 757
Hpy99I CGWCG 1 cut(s) 1337
HpyAV CCTTC 4 cut(s) 70, 602, 619, 1363
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 391, 526, 1343, 1425
HpyF3I CTNAG 3 cut(s) 581, 884, 962
HpySE526I ACGT 1 cut(s) 248
HspAI GCGC 2 cut(s) 237, 661
Kzo9I GATC 2 cut(s) 670, 1356
Lsp1109I GCAGC 3 cut(s) 394, 448, 1082
LweI GCATC 3 cut(s) 527, 1057, 1252
MaeI CTAG 4 cut(s) 56, 614, 788, 792
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 3 cut(s) 39, 251, 887
MalI GATC 2 cut(s) 672, 1358
MboI GATC 2 cut(s) 670, 1356
MboII GAAGA 9 cut(s) 37, 43, 133, 865, 943, 1085, 1166, 1405, 1414
MflI RGATCY 1 cut(s) 1356
MhlI GDGCHC 3 cut(s) 137, 273, 759
MlsI TGGCCA 1 cut(s) 1055
MluNI TGGCCA 1 cut(s) 1055
MlyI GAGTC 3 cut(s) 506, 647, 1199
MmeI TCCRAC 1 cut(s) 544
Mox20I TGGCCA 1 cut(s) 1055
MscI TGGCCA 1 cut(s) 1055
MseI TTAA 4 cut(s) 699, 723, 1106, 1212
MslI CAYNNNNRTG 1 cut(s) 943
Msp20I TGGCCA 1 cut(s) 1055
MspR9I CCNGG 2 cut(s) 258, 418
Mva1269I GAATGC 2 cut(s) 617, 1245
MvaI CCWGG 2 cut(s) 258, 418
MwoI GCNNNNNNNGC 5 cut(s) 191, 391, 526, 1343, 1425
NcoI CCATGG 1 cut(s) 1230
NdeII GATC 2 cut(s) 670, 1356
NheI GCTAGC 2 cut(s) 613, 791
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 3 cut(s) 39, 251, 887
NspI RCATGY 3 cut(s) 277, 961, 1157
PagI TCATGA 3 cut(s) 621, 745, 1027
PctI GAATGC 2 cut(s) 617, 1245
PfeI GAWTC 4 cut(s) 548, 856, 1024, 1316
PkrI GCNGC 4 cut(s) 384, 463, 1072, 1102
PleI GAGTC 3 cut(s) 505, 646, 1199
PpsI GAGTC 3 cut(s) 505, 646, 1199
Ppu21I YACGTR 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 256, 416
PspFI CCCAGC 2 cut(s) 914, 1129
PspGI CCWGG 2 cut(s) 256, 416
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 2 cut(s) 229, 1349
PsuI RGATCY 1 cut(s) 1356
RseI CAYNNNNRTG 1 cut(s) 943
SaqAI TTAA 4 cut(s) 699, 723, 1106, 1212
SatI GCNGC 4 cut(s) 383, 462, 1071, 1101
Sau3AI GATC 2 cut(s) 670, 1356
Sau96I GGNCC 2 cut(s) 229, 1349
SchI GAGTC 3 cut(s) 506, 647, 1199
ScrFI CCNGG 2 cut(s) 258, 418
SduI GDGCHC 3 cut(s) 137, 273, 759
SfaNI GCATC 3 cut(s) 527, 1057, 1252
SinI GGWCC 2 cut(s) 229, 1349
SmiMI CAYNNNNRTG 1 cut(s) 943
SmlI CTYRAG 1 cut(s) 1117
SmoI CTYRAG 1 cut(s) 1117
SsiI CCGC 3 cut(s) 224, 1100, 1426
SspMI CTAG 4 cut(s) 56, 614, 788, 792
StyD4I CCNGG 2 cut(s) 256, 416
StyI CCWWGG 2 cut(s) 543, 1230
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 405
TauI GCSGC 1 cut(s) 1103
TfiI GAWTC 4 cut(s) 548, 856, 1024, 1316
Tru1I TTAA 4 cut(s) 699, 723, 1106, 1212
Tru9I TTAA 4 cut(s) 699, 723, 1106, 1212
TscAI CASTG 2 cut(s) 508, 934
TseFI GTSAC 3 cut(s) 39, 251, 887
TseI GCWGC 3 cut(s) 382, 461, 1070
Tsp45I GTSAC 3 cut(s) 39, 251, 887
TspDTI ATGAA 9 cut(s) 610, 638, 734, 884, 1044, 1085, 1331, 1406, 1458
TspRI CASTG 2 cut(s) 508, 934
VneI GTGCAC 1 cut(s) 755
VpaK11BI GGWCC 2 cut(s) 229, 1349
XapI RAATTY 5 cut(s) 693, 726, 901, 1302, 1328
XceI RCATGY 3 cut(s) 277, 961, 1157
XspI CTAG 4 cut(s) 56, 614, 788, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.