FvH4_7g12282

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000330
Physical Location & Seq
Forward (+)
11146479 .. 11153763
7285 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12282.t2

Sequence Viewer

Length: 819 bp
ATGGGTGTCCTGACTTTCCTCTATCTCATCTTCACATTCACATTTCTGTTCCTCACCTTCGTGTCGTTTCTCATACTCAGAATCTTCACCGGCAAATCTCTCAAAGACCCAAACTACCCACCTGTCAAAGGCACCGTCTTCCACCAGCTCCTCTACTTCACCACACTCTACGATCACCAAACCACAATCACCCGAGACACCCCAACTTACCGGCTTATCGCGCCGGTGCACAGCGAAGTCTACACCGCCGACCCCCGAAACGTCGAACATGTTCTCAAAACCAACTTCGCCAATTACACGAGAGGTGATTACCATGTTGGTATTATGTCTGATATCTTTGGCAAGGGGATATTTGTTGTTGATGGAGAGAAATGGAAGCAGCAGAGGAAGCTTGCCAGTTTCGAGTTTTCGACGAGAGTGCTAAGGGATTTCAGCTGCTCTGTTTTCAGAAGAAATGGTGCTAAATTGGTCAAAGTTATTTCAGAGTACTCTGTTGCAAATGGGAGTTTTGATATGCAGGATTTGCTTATGAGATGTACTTTGGATTCAGTATTTAAAGTTGGGTTTGGAATAGATCTGAATTGCTTGGAGGGTTTAAGCAAAGAAGGGATAGATTTTATGAAGGCATTTGATGAGTCAACTGCTTTGACCTATTGGAGATATGTTGATCCATTCTGGCAATTGAAAAGGTTTCTCAATATTGGTTGTGAGGCTTCCCTTAGAAAGCATGTCAAAGTCATTCATGATTTTGTCCACCAACAGATCAAGAGAAAGAGGGAATTGCTAGCTTTGAAGAAAGATGGTCCTTGGATTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

273

Amino Acids

31.65

Weight (kDa)

9.31

Isoelectric Point (pI)

23.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 96 - 520 6.2e-78 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 221
AciI CCGC 1 cut(s) 246
AclWI GGATC 1 cut(s) 662
AfaI GTAC 2 cut(s) 488, 538
AfiI CCNNNNNNNGG 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 2 cut(s) 685, 793
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 4 cut(s) 148, 391, 435, 788
AluI AGCT 4 cut(s) 148, 391, 435, 788
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 189
Alw44I GTGCAC 1 cut(s) 227
AlwI GGATC 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 379, 435
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 1 cut(s) 270
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 803
AsuHPI GGTGA 6 cut(s) 46, 79, 151, 167, 181, 317
AsuNHI GCTAGC 1 cut(s) 784
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 803
BaeGI GKGCMC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 131
BauI CACGAG 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 391, 422
BccI CCATC 2 cut(s) 356, 794
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 785
BglII AGATCT 1 cut(s) 574
BisI GCNGC 2 cut(s) 380, 436
BlsI GCNGC 2 cut(s) 381, 437
BmcAI AGTACT 1 cut(s) 488
Bme18I GGWCC 1 cut(s) 803
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 803
BmiI GGNNCC 1 cut(s) 133
BmtI GCTAGC 1 cut(s) 788
BpiI GAAGAC 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 806
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse118I RCCGGY 3 cut(s) 89, 210, 223
Bse1I ACTGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 806
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 2 cut(s) 391, 422
Bsh1236I CGCG 1 cut(s) 221
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 3 cut(s) 90, 211, 224
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 4 cut(s) 172, 574, 667, 762
BspACI CCGC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 90
BspFNI CGCG 1 cut(s) 221
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 1 cut(s) 133
BspOI GCTAGC 1 cut(s) 788
BspPI GGATC 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 131
BsrFI RCCGGY 3 cut(s) 89, 210, 223
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 3 cut(s) 89, 210, 223
BssECI CCNNGG 1 cut(s) 806
BssMI GATC 4 cut(s) 172, 574, 667, 762
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 806
Bst2BI CACGAG 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 136
BstAPI GCANNNNNTGC 1 cut(s) 523
BstC8I GCNNGC 2 cut(s) 393, 786
BstDEI CTNAG 3 cut(s) 77, 422, 719
BstENI CCTNNNNNAGG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 221
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 4 cut(s) 175, 577, 670, 765
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 4 cut(s) 172, 574, 667, 762
BstMWI GCNNNNNNNGC 3 cut(s) 220, 388, 523
BstNSI RCATGY 2 cut(s) 272, 731
BstSLI GKGCMC 1 cut(s) 231
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 391, 422
BstV2I GAAGAC 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
Cac8I GCNNGC 2 cut(s) 393, 786
CciI TCATGA 1 cut(s) 742
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 3 cut(s) 89, 210, 223
Cfr13I GGNCC 1 cut(s) 803
Csp6I GTAC 2 cut(s) 487, 537
CviAII CATG 4 cut(s) 269, 314, 728, 743
CviJI RGCY 6 cut(s) 148, 214, 391, 435, 713, 788
CviKI_1 RGCY 6 cut(s) 148, 214, 391, 435, 713, 788
CviQI GTAC 2 cut(s) 487, 537
DdeI CTNAG 3 cut(s) 77, 422, 719
DpnI GATC 4 cut(s) 174, 576, 669, 764
DpnII GATC 4 cut(s) 172, 574, 667, 762
DraI TTTAAA 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 806
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 803
Eco88I CYCGRG 1 cut(s) 192
EcoNI CCTNNNNNAGG 1 cut(s) 126
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 806
ErhI CCWWGG 1 cut(s) 806
FaeI CATG 4 cut(s) 272, 317, 731, 746
FatI CATG 4 cut(s) 268, 313, 727, 742
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 380, 436
Fsp4HI GCNGC 2 cut(s) 380, 436
FspBI CTAG 1 cut(s) 785
GlaI GCGC 1 cut(s) 222
GluI GCNGC 2 cut(s) 380, 436
HapII CCGG 3 cut(s) 90, 211, 224
HhaI GCGC 1 cut(s) 223
Hin1II CATG 4 cut(s) 272, 317, 731, 746
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HincII GTYRAC 1 cut(s) 639
HindII GTYRAC 1 cut(s) 639
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 4 cut(s) 81, 545, 635, 811
HpaII CCGG 3 cut(s) 90, 211, 224
HphI GGTGA 6 cut(s) 46, 79, 151, 167, 181, 317
Hpy166II GTNNAC 4 cut(s) 229, 241, 639, 754
Hpy188I TCNGA 5 cut(s) 80, 331, 449, 484, 579
Hpy188III TCNNGA 3 cut(s) 10, 743, 766
Hpy8I GTNNAC 4 cut(s) 229, 241, 639, 754
Hpy99I CGWCG 2 cut(s) 266, 415
HpyAV CCTTC 3 cut(s) 67, 599, 616
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 3 cut(s) 229, 497, 517
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 388, 523
HpyF3I CTNAG 3 cut(s) 77, 422, 719
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 4 cut(s) 272, 317, 731, 746
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 4 cut(s) 172, 574, 667, 762
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 9 cut(s) 23, 103, 135, 158, 224, 237, 409, 503, 661
Lsp1109I GCAGC 2 cut(s) 391, 422
MaeI CTAG 1 cut(s) 785
MaeII ACGT 1 cut(s) 261
MalI GATC 4 cut(s) 174, 576, 669, 764
MboI GATC 4 cut(s) 172, 574, 667, 762
MboII GAAGA 5 cut(s) 22, 76, 130, 462, 805
MfeI CAATTG 1 cut(s) 680
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 5 cut(s) 292, 464, 580, 680, 779
MlyI GAGTC 1 cut(s) 644
MnlI CCTC 8 cut(s) 29, 62, 161, 296, 378, 583, 703, 768
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 2 cut(s) 555, 596
MslI CAYNNNNRTG 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 3 cut(s) 90, 211, 224
MunI CAATTG 1 cut(s) 680
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 220, 388, 523
NdeII GATC 4 cut(s) 172, 574, 667, 762
NheI GCTAGC 1 cut(s) 784
NlaIII CATG 4 cut(s) 272, 317, 731, 746
NlaIV GGNNCC 1 cut(s) 133
NspI RCATGY 2 cut(s) 272, 731
OliI CACNNNNGTG 1 cut(s) 59
PagI TCATGA 1 cut(s) 742
PciI ACATGT 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 81, 545, 811
PkrI GCNGC 2 cut(s) 381, 437
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PscI ACATGT 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 803
PsuI RGATCY 1 cut(s) 574
PvuII CAGCTG 1 cut(s) 435
RsaI GTAC 2 cut(s) 488, 538
RsaNI GTAC 2 cut(s) 487, 537
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 2 cut(s) 555, 596
SatI GCNGC 2 cut(s) 380, 436
Sau3AI GATC 4 cut(s) 172, 574, 667, 762
Sau96I GGNCC 1 cut(s) 803
ScaI AGTACT 1 cut(s) 488
SchI GAGTC 1 cut(s) 644
SduI GDGCHC 1 cut(s) 231
SgrAI CRCCGGYG 1 cut(s) 223
SinI GGWCC 1 cut(s) 803
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 5 cut(s) 292, 464, 580, 680, 779
SsiI CCGC 1 cut(s) 246
SspI AATATT 1 cut(s) 700
SspMI CTAG 1 cut(s) 785
StyI CCWWGG 1 cut(s) 806
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 264
TaqI TCGA 3 cut(s) 264, 402, 410
TasI AATT 5 cut(s) 292, 464, 580, 680, 779
TatI WGTACW 2 cut(s) 486, 536
TfiI GAWTC 3 cut(s) 81, 545, 811
Tru1I TTAA 2 cut(s) 555, 596
Tru9I TTAA 2 cut(s) 555, 596
TseI GCWGC 2 cut(s) 379, 435
TspDTI ATGAA 2 cut(s) 635, 731
VneI GTGCAC 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 803
XagI CCTNNNNNAGG 1 cut(s) 126
XceI RCATGY 2 cut(s) 272, 731
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 785
ZrmI AGTACT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.