Rmu_sc0006087.1_g000001

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006087.1
OG0000330
Physical Location & Seq
Forward (+)
1 .. 449
449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006087.1_g000001.1.cds

Sequence Viewer

Length: 314 bp
aagagtttcggccagagagatggctcgacaaaaatggccaattccaggatgaaagcccatttaaattcacagccttccaggctggtccaagaatttgtccaggacaggaacatgcgtatatgtatatgaagatcttttctgctgtgcttttaggcagctatatatttaagctagctgatgagacgaaagtggtcaactacaagacgatggtcagcctccaaattgatgggggactttatttacatgccaccccaagatcagggaatggaagaccttatatcccatgctctaaacatctttcgcgtcttcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

103

Amino Acids

11.84

Weight (kDa)

9.2

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 303
AcoI YGGCCR 2 cut(s) 10, 36
AcsI RAATTY 2 cut(s) 64, 92
AfiI CCNNNNNNNGG 2 cut(s) 45, 259
AjnI CCWGG 3 cut(s) 44, 77, 99
AluBI AGCT 3 cut(s) 158, 171, 175
AluI AGCT 3 cut(s) 158, 171, 175
Alw26I GTCTC 1 cut(s) 175
AoxI GGCC 2 cut(s) 10, 36
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 64, 92
AspS9I GGNCC 1 cut(s) 85
AsuNHI GCTAGC 1 cut(s) 171
AvaII GGWCC 1 cut(s) 85
BalI TGGCCA 1 cut(s) 38
BbsI GAAGAC 2 cut(s) 276, 298
BbvI GCAGC 1 cut(s) 167
BccI CCATC 3 cut(s) 14, 201, 220
BciT130I CCWGG 3 cut(s) 46, 79, 101
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 2 cut(s) 172, 312
BglI GCCNNNNNGGC 1 cut(s) 79
BglII AGATCT 1 cut(s) 131
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 3 cut(s) 46, 79, 101
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmrFI CCNGG 3 cut(s) 46, 79, 101
BmtI GCTAGC 1 cut(s) 175
BoxI GACNNNNGTC 1 cut(s) 208
BpiI GAAGAC 2 cut(s) 276, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 259
BseBI CCWGG 3 cut(s) 46, 79, 101
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 45, 259
BseXI GCAGC 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 12, 38
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 45, 259
BsmAI GTCTC 1 cut(s) 175
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 2 cut(s) 12, 38
Bsp143I GATC 2 cut(s) 131, 256
BspANI GGCC 2 cut(s) 12, 38
BspFNI CGCG 1 cut(s) 303
BspOI GCTAGC 1 cut(s) 175
BssMI GATC 2 cut(s) 131, 256
Bst2UI CCWGG 3 cut(s) 46, 79, 101
BstC8I GCNNGC 1 cut(s) 173
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 303
BstKTI GATC 2 cut(s) 134, 259
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 2 cut(s) 131, 256
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 3 cut(s) 46, 79, 101
BstNSI RCATGY 2 cut(s) 115, 247
BstPAI GACNNNNGTC 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 44, 77, 99
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 2 cut(s) 276, 298
BstX2I RGATCY 1 cut(s) 131
BstXI CCANNNNNNTGG 2 cut(s) 20, 226
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 2 cut(s) 12, 38
BtsCI GGATG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 85
CseI GACGC 1 cut(s) 292
CviAII CATG 3 cut(s) 112, 244, 284
DpnI GATC 2 cut(s) 133, 258
DpnII GATC 2 cut(s) 131, 256
DraI TTTAAA 1 cut(s) 63
EaeI YGGCCR 2 cut(s) 10, 36
Eco47I GGWCC 1 cut(s) 85
EcoRII CCWGG 3 cut(s) 44, 77, 99
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 3 cut(s) 115, 247, 287
FaqI GGGAC 1 cut(s) 245
FatI CATG 3 cut(s) 111, 243, 283
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 2 cut(s) 172, 312
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 2 cut(s) 12, 38
HgaI GACGC 1 cut(s) 292
Hin1II CATG 3 cut(s) 115, 247, 287
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
Hsp92II CATG 3 cut(s) 115, 247, 287
Kzo9I GATC 2 cut(s) 131, 256
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 2 cut(s) 172, 312
MalI GATC 2 cut(s) 133, 258
MboI GATC 2 cut(s) 131, 256
MboII GAAGA 3 cut(s) 141, 281, 298
MflI RGATCY 1 cut(s) 131
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 4 cut(s) 40, 64, 92, 221
MluNI TGGCCA 1 cut(s) 38
MnlI CCTC 1 cut(s) 226
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 2 cut(s) 62, 167
Msp20I TGGCCA 1 cut(s) 38
MspR9I CCNGG 3 cut(s) 46, 79, 101
MvaI CCWGG 3 cut(s) 46, 79, 101
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 2 cut(s) 131, 256
NheI GCTAGC 1 cut(s) 171
NlaIII CATG 3 cut(s) 115, 247, 287
NspI RCATGY 2 cut(s) 115, 247
PfoI TCCNGGA 2 cut(s) 44, 99
PkrI GCNGC 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 208
Psp6I CCWGG 3 cut(s) 44, 77, 99
PspGI CCWGG 3 cut(s) 44, 77, 99
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 131
SaqAI TTAA 2 cut(s) 62, 167
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 131, 256
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 3 cut(s) 46, 79, 101
SetI ASST 4 cut(s) 160, 173, 177, 276
SinI GGWCC 1 cut(s) 85
SmiI ATTTAAAT 1 cut(s) 63
Sse9I AATT 4 cut(s) 40, 64, 92, 221
SspMI CTAG 2 cut(s) 172, 312
StyD4I CCNGG 3 cut(s) 44, 77, 99
SwaI ATTTAAAT 1 cut(s) 63
TaqI TCGA 1 cut(s) 26
TasI AATT 4 cut(s) 40, 64, 92, 221
Tru1I TTAA 2 cut(s) 62, 167
Tru9I TTAA 2 cut(s) 62, 167
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 65, 142
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 2 cut(s) 64, 92
XceI RCATGY 2 cut(s) 115, 247
XspI CTAG 2 cut(s) 172, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.