Rh1AG230400

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000330
Physical Location & Seq
Forward (+)
43680617 .. 43686131
5515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG230400.1

Sequence Viewer

Length: 675 bp
ATGAGATGTACTTTGGATTCAATGTTCAAAGTTGGGTTTGGAATAGAACTGAATTTCTTGGAGGGTTCAAGCAAAGATGGGATAGAATTTATGAAGGCATTTGATGAGTCAACTGCTTTGACCTATTGGCGATATGTTGATCCATTCTGGCAATTGAAAAGGTTTCTCAATATTGGTTGTGAGGCCGCCCTTAAAAAGTATGTCAAAGTCATTCATGATTTTGTGCACCAACATATCAGGAGAAAGAGGGAATTGGTAGCTGTGAAGAAAGATGGTGATGGGAGATGTGCAGAGAAGGATGACATTCTTCCTGATGGCTTTAGACTGAAAAAAGGAGACGGAATAAACTACATGGCATATTCCATGGGGAGAATGCCTTACATTTGGGGACAAGATGCTGAGGATTTCAGACCTGAAATATGGCTCAACAATGGAGTTTTCCAGCCTGAATCAACTTTCAAATTTGTCACATTTCATGCTGGTCCTCGGATCTGTCTAGGGAAGGACTTTGCCTACCGGCAGATGAAGATAGTAGCAATGGCTCTTCTTTACTTCTTCCGCTTCAAATTGGCCGATGAAGGAAAAGAAGTTAACTACAGGACCACGTTCACCCTTCACATTGATGGCAATCTCCCCATGCTTGCAGTTCGAAGGACAATGGACTCATACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

224

Amino Acids

26.23

Weight (kDa)

9.04

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 95 - 205 1.9e-19 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 186, 559
AclWI GGATC 2 cut(s) 134, 497
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 3 cut(s) 52, 86, 461
AfaI GTAC 1 cut(s) 10
AgsI TTSAA 6 cut(s) 21, 28, 69, 157, 460, 565
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 330
Alw44I GTGCAC 1 cut(s) 224
AlwI GGATC 2 cut(s) 134, 497
AoxI GGCC 2 cut(s) 183, 570
ApaLI GTGCAC 1 cut(s) 224
ApoI RAATTY 3 cut(s) 52, 86, 461
AspS9I GGNCC 2 cut(s) 482, 600
AsuHPI GGTGA 2 cut(s) 287, 601
AsuII TTCGAA 1 cut(s) 649
AvaII GGWCC 2 cut(s) 482, 600
BaeGI GKGCMC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 228
BbvCI CCTCAGC 1 cut(s) 399
BccI CCATC 5 cut(s) 71, 266, 272, 308, 617
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 497
BfmI CTRYAG 1 cut(s) 595
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme18I GGWCC 2 cut(s) 482, 600
BmgT120I GGNCC 2 cut(s) 482, 600
BmsI GCATC 1 cut(s) 385
Bpu10I CCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 649
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 363, 485
Bse118I RCCGGY 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 543
Bse8I GATNNNNATC 1 cut(s) 627
BseDI CCNNGG 2 cut(s) 363, 485
BseGI GGATG 1 cut(s) 304
BseJI GATNNNNATC 1 cut(s) 627
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 1 cut(s) 390
BseSI GKGCMC 1 cut(s) 228
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 2 cut(s) 185, 572
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 517
BslFI GGGAC 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 330
BsmBI CGTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 402
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 2 cut(s) 185, 572
Bsp119I TTCGAA 1 cut(s) 649
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 139, 489
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 2 cut(s) 186, 559
BspANI GGCC 2 cut(s) 185, 572
BspCNI CTCAG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 214
BspPI GGATC 2 cut(s) 134, 497
BspQI GCTCTTC 1 cut(s) 549
BspT104I TTCGAA 1 cut(s) 649
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 516
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 2 cut(s) 363, 485
BssMI GATC 2 cut(s) 139, 489
BssT1I CCWWGG 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 649
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 2 cut(s) 142, 492
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 2 cut(s) 139, 489
BstSFI CTRYAG 1 cut(s) 595
BstSLI GKGCMC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
BsuRI GGCC 2 cut(s) 185, 572
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 642
CciI TCATGA 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 2 cut(s) 482, 600
Csp6I GTAC 1 cut(s) 9
CviAII CATG 5 cut(s) 215, 352, 364, 476, 637
CviJI RGCY 7 cut(s) 185, 260, 318, 424, 445, 542, 572
CviKI_1 RGCY 7 cut(s) 185, 260, 318, 424, 445, 542, 572
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 399
DpnI GATC 2 cut(s) 141, 491
DpnII GATC 2 cut(s) 139, 489
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Eco130I CCWWGG 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 482, 600
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 5 cut(s) 218, 355, 367, 479, 640
FaqI GGGAC 1 cut(s) 402
FatI CATG 5 cut(s) 214, 351, 363, 475, 636
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 497
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 2 cut(s) 185, 572
HapII CCGG 1 cut(s) 517
Hin1II CATG 5 cut(s) 218, 355, 367, 479, 640
HincII GTYRAC 2 cut(s) 111, 592
HindII GTYRAC 2 cut(s) 111, 592
HinfI GANTC 4 cut(s) 17, 107, 449, 662
HpaI GTTAAC 1 cut(s) 592
HpaII CCGG 1 cut(s) 517
HphI GGTGA 2 cut(s) 287, 601
Hpy166II GTNNAC 4 cut(s) 111, 226, 592, 609
Hpy188I TCNGA 2 cut(s) 410, 489
Hpy188III TCNNGA 3 cut(s) 215, 238, 311
Hpy8I GTNNAC 4 cut(s) 111, 226, 592, 609
HpyAV CCTTC 6 cut(s) 88, 289, 496, 572, 623, 645
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 3 cut(s) 226, 290, 644
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 1 cut(s) 605
Hsp92II CATG 5 cut(s) 218, 355, 367, 479, 640
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 2 cut(s) 139, 489
LguI GCTCTTC 1 cut(s) 549
LpnPI CCDG 9 cut(s) 133, 223, 324, 426, 455, 459, 465, 530, 583
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 497
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 1 cut(s) 466
MalI GATC 2 cut(s) 141, 491
MboI GATC 2 cut(s) 139, 489
MboII GAAGA 5 cut(s) 277, 299, 536, 538, 547
MfeI CAATTG 1 cut(s) 152
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 6 cut(s) 52, 86, 152, 251, 461, 566
MlyI GAGTC 2 cut(s) 116, 656
MnlI CCTC 5 cut(s) 55, 175, 240, 394, 495
MseI TTAA 2 cut(s) 192, 591
MslI CAYNNNNRTG 1 cut(s) 621
MspI CCGG 1 cut(s) 517
MunI CAATTG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 378
NcoI CCATGG 1 cut(s) 363
NdeII GATC 2 cut(s) 139, 489
NlaIII CATG 5 cut(s) 218, 355, 367, 479, 640
NmuCI GTSAC 1 cut(s) 466
NspV TTCGAA 1 cut(s) 649
PagI TCATGA 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 549
PctI GAATGC 1 cut(s) 378
PfeI GAWTC 2 cut(s) 17, 449
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 2 cut(s) 115, 656
PpsI GAGTC 2 cut(s) 115, 656
PspPI GGNCC 2 cut(s) 482, 600
PsuI RGATCY 1 cut(s) 489
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 621
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 2 cut(s) 192, 591
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 139, 489
Sau96I GGNCC 2 cut(s) 482, 600
SchI GAGTC 2 cut(s) 116, 656
SduI GDGCHC 1 cut(s) 228
SetI ASST 5 cut(s) 125, 164, 262, 415, 608
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 595
SfuI TTCGAA 1 cut(s) 649
SinI GGWCC 2 cut(s) 482, 600
SmiMI CAYNNNNRTG 1 cut(s) 621
Sse9I AATT 6 cut(s) 52, 86, 152, 251, 461, 566
SsiI CCGC 2 cut(s) 186, 559
SspI AATATT 1 cut(s) 172
SspMI CTAG 1 cut(s) 497
StyI CCWWGG 1 cut(s) 363
TaiI ACGT 1 cut(s) 608
TaqI TCGA 1 cut(s) 649
TasI AATT 6 cut(s) 52, 86, 152, 251, 461, 566
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 2 cut(s) 17, 449
Tru1I TTAA 2 cut(s) 192, 591
Tru9I TTAA 2 cut(s) 192, 591
TseFI GTSAC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 5 cut(s) 107, 203, 464, 539, 591
TspGWI ACGGA 1 cut(s) 354
VneI GTGCAC 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 482, 600
XapI RAATTY 3 cut(s) 52, 86, 461
XspI CTAG 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.