MD02G1200400.v1.1

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000330
Physical Location & Seq
Reverse (-)
19730591 .. 19731169
579 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1200400.v1.1.491

Sequence Viewer

Length: 252 bp
ATGAAGGCCTATGATGAATCTACAGCACTGACCTATTTTCGCTACATTGATCCATTCTGGAAACTAAAAAGAATCTTCAACCTTGGTTTTGAGGCCTTCCTTAAAAATTATGTCAAAGTTGTAGATGATTTTCTACACCAAGTTATCAACAGCAGGAGGAGATTGCAAGATGAGCAAAAAGATGTTATTGACAAGGAGGACATACTGTTAAGGTTTCTACTGGAGAGTGAAGAATCCAGAGGAAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

84

Amino Acids

10.11

Weight (kDa)

5.43

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 44
AgsI TTSAA 1 cut(s) 79
AlwI GGATC 1 cut(s) 44
AoxI GGCC 2 cut(s) 6, 93
BfmI CTRYAG 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 172
BshFI GGCC 2 cut(s) 8, 95
BsnI GGCC 2 cut(s) 8, 95
Bsp143I GATC 1 cut(s) 49
BspANI GGCC 2 cut(s) 8, 95
BspPI GGATC 1 cut(s) 44
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 207
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 21
BsuRI GGCC 2 cut(s) 8, 95
BtsIMutI CAGTG 1 cut(s) 26
CviJI RGCY 2 cut(s) 8, 95
CviKI_1 RGCY 2 cut(s) 8, 95
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 82
Eco147I AGGCCT 2 cut(s) 8, 95
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaiI YATR 3 cut(s) 12, 111, 203
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 2 cut(s) 8, 95
HinfI GANTC 3 cut(s) 17, 72, 233
Hpy188III TCNNGA 2 cut(s) 58, 237
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 3 cut(s) 43, 139, 206
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 2 cut(s) 67, 242
MluCI AATT 1 cut(s) 106
MnlI CCTC 4 cut(s) 85, 150, 190, 233
MseI TTAA 2 cut(s) 102, 209
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 1 cut(s) 49
PceI AGGCCT 2 cut(s) 8, 95
PfeI GAWTC 3 cut(s) 17, 72, 233
SaqAI TTAA 2 cut(s) 102, 209
Sau3AI GATC 1 cut(s) 49
SetI ASST 3 cut(s) 35, 84, 215
SfcI CTRYAG 1 cut(s) 21
SgeI CNNG 7 cut(s) 70, 95, 152, 166, 179, 205, 233
Sse9I AATT 1 cut(s) 106
SseBI AGGCCT 2 cut(s) 8, 95
StuI AGGCCT 2 cut(s) 8, 95
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 207
TasI AATT 1 cut(s) 106
TfiI GAWTC 3 cut(s) 17, 72, 233
Tru1I TTAA 2 cut(s) 102, 209
Tru9I TTAA 2 cut(s) 102, 209
TscAI CASTG 1 cut(s) 33
TspDTI ATGAA 2 cut(s) 17, 30
TspRI CASTG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.