Rmu_co7992102.1_g000001

cytochrome P450

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7992102.1
Physical Location & Seq
Reverse (-)
2 .. 491
490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7992102.1_g000001.1.cds

Sequence Viewer

Length: 379 bp
atgctcagcaagaaccctctaatacaggaaaaagcttcacaagaagttaggaatgttgttggtctgaatcatgaagttaatgtcgacgaatttgtggccagtataactgatgcaactcttgaacaaatgcattatcttcatgcaacaataacagagaccttgaggctatacccagcagttcctgtggatgggaggtgtgcagagatagatgacattcttcctgatggctttagagtcaaaaaaggagatggagtaaactatatgacctatgccatgggcaggatgccttatatatggggaaaagatgcggaggatttccgacctgaaagatggctcaaggatggaattttccagcctgaatcgcctttcaaatttgtcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.43

Weight (kDa)

4.99

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 3 cut(s) 89, 345, 371
AfiI CCNNNNNNNGG 2 cut(s) 188, 279
AgsI TTSAA 2 cut(s) 122, 370
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 1 cut(s) 96
ApoI RAATTY 3 cut(s) 89, 345, 371
BalI TGGCCA 1 cut(s) 98
BccI CCATC 5 cut(s) 182, 218, 242, 324, 335
BcoDI GTCTC 1 cut(s) 149
BlpI GCTNAGC 1 cut(s) 5
BmsI GCATC 3 cut(s) 100, 273, 295
Bpu1102I GCTNAGC 1 cut(s) 5
BpuEI CTTGAG 2 cut(s) 181, 320
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 279
Bse1I ACTGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 3 cut(s) 193, 288, 346
BseLI CCNNNNNNNGG 2 cut(s) 188, 279
BseMII CTCAG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 99
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 188, 279
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 149
Bsp1720I GCTNAGC 1 cut(s) 5
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 1 cut(s) 308
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 18
BspHI TCATGA 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 193, 288, 346
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 361
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 3 cut(s) 193, 288, 346
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 1 cut(s) 70
CviAII CATG 3 cut(s) 71, 140, 274
CviJI RGCY 6 cut(s) 35, 98, 166, 228, 334, 355
CviKI_1 RGCY 6 cut(s) 35, 98, 166, 228, 334, 355
DdeI CTNAG 1 cut(s) 5
EaeI YGGCCR 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 3 cut(s) 74, 143, 277
FatI CATG 3 cut(s) 70, 139, 273
FblI GTMKAC 1 cut(s) 84
FokI GGATG 3 cut(s) 200, 295, 353
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 3 cut(s) 74, 143, 277
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 33
HinfI GANTC 3 cut(s) 67, 234, 359
Hpy166II GTNNAC 2 cut(s) 85, 256
Hpy188I TCNGA 2 cut(s) 66, 320
Hpy188III TCNNGA 3 cut(s) 71, 119, 221
Hpy8I GTNNAC 2 cut(s) 85, 256
Hpy99I CGWCG 1 cut(s) 89
HpyCH4V TGCA 4 cut(s) 113, 130, 143, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 3 cut(s) 74, 143, 277
LpnPI CCDG 9 cut(s) 11, 112, 186, 195, 234, 265, 336, 365, 369
LweI GCATC 3 cut(s) 100, 273, 295
MboII GAAGA 2 cut(s) 128, 209
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 3 cut(s) 89, 345, 371
MluNI TGGCCA 1 cut(s) 98
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 4 cut(s) 27, 156, 186, 304
Mox20I TGGCCA 1 cut(s) 98
Mph1103I ATGCAT 1 cut(s) 132
MscI TGGCCA 1 cut(s) 98
MseI TTAA 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 361
NcoI CCATGG 1 cut(s) 273
NlaIII CATG 3 cut(s) 74, 143, 277
NsiI ATGCAT 1 cut(s) 132
PagI TCATGA 1 cut(s) 70
PfeI GAWTC 2 cut(s) 67, 359
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 182
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 78
SchI GAGTC 1 cut(s) 243
SetI ASST 5 cut(s) 37, 161, 197, 269, 325
SfaNI GCATC 3 cut(s) 100, 273, 295
SmlI CTYRAG 2 cut(s) 160, 335
SmoI CTYRAG 2 cut(s) 160, 335
Sse9I AATT 3 cut(s) 89, 345, 371
SsiI CCGC 1 cut(s) 308
StyI CCWWGG 1 cut(s) 273
TaqI TCGA 1 cut(s) 84
TasI AATT 3 cut(s) 89, 345, 371
TfiI GAWTC 2 cut(s) 67, 359
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TspDTI ATGAA 2 cut(s) 87, 128
XapI RAATTY 3 cut(s) 89, 345, 371
XmiI GTMKAC 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.