MD02G1200000.v1.1

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000330
Physical Location & Seq
Reverse (-)
19689281 .. 19690950
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1200000.v1.1.491

Sequence Viewer

Length: 981 bp
ATGTGTCTCTACCATATAATTCTATTTGTTTTTTACACACCATCAGTTATTCGGGTGAGGAAAACTTACAGCAAGGGTATTGTTTTGCACACATCATTTTTCCCCTCCTACGCCCCACAGTTTATTTCTGACCTTCGGATTGTAGAAATCAAAAGAGAATTAAAGGGAAAAATAAACAAGGGTGTCCAGAAGGAGAAACAAGGTATTGAAAAGGAGGACATACTGTCAAGGTTTCTACTGGAGAATGTGAAGAATCCAGAGGAAATGAATGACAAACATATGAGGGATATAATACTGACTTTTATGTTTGCTGGCAAAGACACCAGTGCAACTACACTGTCATGGTTGTTCTACATGCTCAGCAAGAACCCTCTAATACAAGAAAAAGTTGTACAAGAAGTGAGGGACGTCGTTGGTAATCAGGTAGGTGAAGCGAAAGTTGATGAATTCGTGGAAAACATAACTGAAGAAACTTTAGAACGAATGCACTATCTTAACGCGGCGCTGACAGAGACCTTAAGGATCTACCCTGCAGTTCCAATAGTATATGCAGATGACATTCTTCCAGATGGCTTTAGAGTGAGAAAAGGAGACAACGTAAACTACATCACCTATGCCATGGGAAGAATGCCTTATATCTGGGGAAAAGATGCTGATGATTTCCAACCTGAAAGATGGCTTGAAAATGGAATTTTCAAGCCCGAATCACCCTTCAAATTAGTCGCATTTCACGCAGGTCCGCAAATCTGTCTAGGGAAGGACTTTGCTTACCGGCAGATGAAGATAGTAGCGATGGCTCTCCTTAGCTTCTTTCGCTTCAAATTGGCCGATGAAACAAAGATGGTAACTTATAGGACCATGTTCACCCTTCAAATATATAGATGGCAGTCTCCCTATGATTGCAGTTCCCAGAACAACCTAAGTAATTTCTTCTATGCATTGAAAAATAATGTTCAAGGTTTATCAACCATGCAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

327

Amino Acids

38.02

Weight (kDa)

8.52

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 34 - 283 2.9e-53 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 411
Acc36I ACCTGC 1 cut(s) 725
AccII CGCG 1 cut(s) 500
AciI CCGC 2 cut(s) 500, 740
AclWI GGATC 1 cut(s) 530
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 2 cut(s) 446, 690
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 1 cut(s) 393
AflII CTTAAG 1 cut(s) 517
AgsI TTSAA 8 cut(s) 209, 683, 697, 715, 820, 872, 943, 956
AhdI GACNNNNNGTC 1 cut(s) 223
AluBI AGCT 1 cut(s) 807
AluI AGCT 1 cut(s) 807
Alw26I GTCTC 4 cut(s) 11, 506, 585, 894
AlwI GGATC 1 cut(s) 530
AoxI GGCC 1 cut(s) 825
ApoI RAATTY 2 cut(s) 446, 690
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 2 cut(s) 737, 855
AsuHPI GGTGA 5 cut(s) 67, 440, 601, 699, 856
AvaII GGWCC 2 cut(s) 737, 855
BccI CCATC 6 cut(s) 49, 563, 669, 787, 835, 876
BcoDI GTCTC 4 cut(s) 11, 506, 585, 894
BfaI CTAG 1 cut(s) 752
BfmI CTRYAG 1 cut(s) 531
BfoI RGCGCY 1 cut(s) 506
BfrI CTTAAG 1 cut(s) 517
BfuAI ACCTGC 1 cut(s) 725
BisI GCNGC 1 cut(s) 501
BlpI GCTNAGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 502
Bme18I GGWCC 2 cut(s) 737, 855
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 737, 855
BmsI GCATC 1 cut(s) 640
BpmI CTGGAG 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 803
Bpu1102I GCTNAGC 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 408
BsaI GGTCTC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 618
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bse118I RCCGGY 1 cut(s) 771
Bse1I ACTGG 2 cut(s) 243, 324
BseDI CCNNGG 1 cut(s) 618
BseMII CTCAG 1 cut(s) 373
BseNI ACTGG 2 cut(s) 243, 324
Bsh1236I CGCG 1 cut(s) 500
BshFI GGCC 1 cut(s) 827
BsiSI CCGG 1 cut(s) 772
BslFI GGGAC 1 cut(s) 419
BsmAI GTCTC 4 cut(s) 11, 506, 585, 894
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 2 cut(s) 489, 633
BsnI GGCC 1 cut(s) 827
Bso31I GGTCTC 1 cut(s) 506
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 1 cut(s) 522
Bsp1720I GCTNAGC 1 cut(s) 359
Bsp19I CCATGG 1 cut(s) 618
BspACI CCGC 2 cut(s) 500, 740
BspANI GGCC 1 cut(s) 827
BspCNI CTCAG 1 cut(s) 372
BspFNI CGCG 1 cut(s) 500
BspMAI CTGCAG 1 cut(s) 535
BspMI ACCTGC 1 cut(s) 725
BspPI GGATC 1 cut(s) 530
BspTI CTTAAG 1 cut(s) 517
BspTNI GGTCTC 1 cut(s) 506
BsrFI RCCGGY 1 cut(s) 771
BsrGI TGTACA 1 cut(s) 391
BsrI ACTGG 2 cut(s) 243, 324
BssAI RCCGGY 1 cut(s) 771
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 1 cut(s) 522
BssNI GRCGYC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 618
Bst4CI ACNGT 3 cut(s) 120, 225, 339
BstACI GRCGYC 1 cut(s) 408
BstAFI CTTAAG 1 cut(s) 517
BstAUI TGTACA 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 3 cut(s) 359, 803, 920
BstDSI CCRYGG 1 cut(s) 618
BstFNI CGCG 1 cut(s) 500
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 1 cut(s) 525
BstMAI GTCTC 4 cut(s) 11, 506, 585, 894
BstMBI GATC 1 cut(s) 522
BstMWI GCNNNNNNNGC 2 cut(s) 731, 813
BstNSI RCATGY 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 531
BstUI CGCG 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 522
BstYI RGATCY 1 cut(s) 522
BsuRI GGCC 1 cut(s) 827
BtgI CCRYGG 1 cut(s) 618
BtgZI GCGATG 1 cut(s) 806
BtsIMutI CAGTG 2 cut(s) 331, 335
BveI ACCTGC 1 cut(s) 725
Cac8I GCNNGC 1 cut(s) 313
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 771
Cfr13I GGNCC 2 cut(s) 737, 855
Csp6I GTAC 1 cut(s) 392
CviAII CATG 5 cut(s) 342, 355, 619, 859, 970
CviJI RGCY 6 cut(s) 573, 679, 700, 797, 807, 827
CviKI_1 RGCY 6 cut(s) 573, 679, 700, 797, 807, 827
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 3 cut(s) 359, 803, 920
DpnI GATC 1 cut(s) 524
DpnII GATC 1 cut(s) 522
DriI GACNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 825
Eam1105I GACNNNNNGTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 618
Eco31I GGTCTC 1 cut(s) 506
Eco47I GGWCC 2 cut(s) 737, 855
Eco57I CTGAAG 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 446
EcoT14I CCWWGG 1 cut(s) 618
EcoT22I ATGCAT 1 cut(s) 940
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 5 cut(s) 345, 358, 622, 862, 973
FalI AAGNNNNNCTT 2 cut(s) 616, 648
FaqI GGGAC 1 cut(s) 419
FatI CATG 5 cut(s) 341, 354, 618, 858, 969
FauNDI CATATG 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 501
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 1 cut(s) 752
GlaI GCGC 1 cut(s) 504
GluI GCNGC 1 cut(s) 501
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 1 cut(s) 827
HapII CCGG 1 cut(s) 772
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 5 cut(s) 345, 358, 622, 862, 973
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 2 cut(s) 253, 704
HpaII CCGG 1 cut(s) 772
HphI GGTGA 5 cut(s) 67, 440, 601, 699, 856
Hpy166II GTNNAC 2 cut(s) 601, 864
Hpy188I TCNGA 2 cut(s) 130, 138
Hpy188III TCNNGA 3 cut(s) 187, 257, 566
Hpy8I GTNNAC 2 cut(s) 601, 864
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 5 cut(s) 143, 184, 721, 751, 878
HpyCH4III ACNGT 3 cut(s) 120, 225, 339
HpyCH4IV ACGT 2 cut(s) 408, 597
HpyCH4V TGCA 8 cut(s) 88, 329, 487, 533, 551, 903, 938, 973
HpyF10VI GCNNNNNNNGC 2 cut(s) 731, 813
HpyF3I CTNAG 3 cut(s) 359, 803, 920
HpySE526I ACGT 2 cut(s) 408, 597
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 5 cut(s) 345, 358, 622, 862, 973
HspAI GCGC 1 cut(s) 503
Kzo9I GATC 1 cut(s) 522
LweI GCATC 1 cut(s) 640
MaeI CTAG 1 cut(s) 752
MaeII ACGT 2 cut(s) 408, 597
MaeIII GTNAC 1 cut(s) 844
MalI GATC 1 cut(s) 524
MboI GATC 1 cut(s) 522
MboII GAAGA 6 cut(s) 262, 479, 554, 636, 793, 922
MflI RGATCY 1 cut(s) 522
MluCI AATT 7 cut(s) 18, 158, 446, 690, 716, 821, 925
MmeI TCCRAC 1 cut(s) 688
MnlI CCTC 7 cut(s) 51, 115, 208, 253, 276, 381, 396
Mph1103I ATGCAT 1 cut(s) 940
MseI TTAA 3 cut(s) 161, 495, 518
MslI CAYNNNNRTG 2 cut(s) 340, 974
MspCI CTTAAG 1 cut(s) 517
MspI CCGG 1 cut(s) 772
Mva1269I GAATGC 2 cut(s) 489, 633
MvnI CGCG 1 cut(s) 500
MwoI GCNNNNNNNGC 2 cut(s) 731, 813
NcoI CCATGG 1 cut(s) 618
NdeI CATATG 1 cut(s) 279
NdeII GATC 1 cut(s) 522
NlaIII CATG 5 cut(s) 345, 358, 622, 862, 973
NsiI ATGCAT 1 cut(s) 940
NspI RCATGY 1 cut(s) 358
PctI GAATGC 2 cut(s) 489, 633
PfeI GAWTC 2 cut(s) 253, 704
PkrI GCNGC 1 cut(s) 502
PspPI GGNCC 2 cut(s) 737, 855
PstI CTGCAG 1 cut(s) 535
PsuI RGATCY 1 cut(s) 522
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 2 cut(s) 340, 974
SaqAI TTAA 3 cut(s) 161, 495, 518
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 1 cut(s) 522
Sau96I GGNCC 2 cut(s) 737, 855
SfaNI GCATC 1 cut(s) 640
SfcI CTRYAG 1 cut(s) 531
SinI GGWCC 2 cut(s) 737, 855
SmiMI CAYNNNNRTG 2 cut(s) 340, 974
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
Sse9I AATT 7 cut(s) 18, 158, 446, 690, 716, 821, 925
SsiI CCGC 2 cut(s) 500, 740
SspMI CTAG 1 cut(s) 752
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 3 cut(s) 120, 225, 339
TaiI ACGT 2 cut(s) 411, 600
TasI AATT 7 cut(s) 18, 158, 446, 690, 716, 821, 925
TatI WGTACW 1 cut(s) 391
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 2 cut(s) 253, 704
Tru1I TTAA 3 cut(s) 161, 495, 518
Tru9I TTAA 3 cut(s) 161, 495, 518
TscAI CASTG 2 cut(s) 331, 342
TspDTI ATGAA 4 cut(s) 281, 459, 794, 846
TspRI CASTG 2 cut(s) 331, 342
Vha464I CTTAAG 1 cut(s) 517
VpaK11BI GGWCC 2 cut(s) 737, 855
XapI RAATTY 2 cut(s) 446, 690
XceI RCATGY 1 cut(s) 358
XspI CTAG 1 cut(s) 752
ZraI GACGTC 1 cut(s) 409
Zsp2I ATGCAT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.