RchiOBHm_Chr1g0351031

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000330
Physical Location & Seq
Reverse (-)
44178373 .. 44179419
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57685

Sequence Viewer

Length: 858 bp
ATGGAGGACATACTATCAAGGTTTATGGAAAGTGAGAAGGATCCAGAGCAAATGAATGACAAATATCCAGGTGATATAATTCTGAATTTTATGATAGCTGGCAAAGATACAAGTGCAAATACATTGTCATGGTTCTTCTACATGATCAGCAAGAACCCTCTAATACAGGAAAAAGTTGCACAAGAAGTGAAGGATGTTGTTTGTATGAAACACGACGCTGACATTGATGAATTTGTGACGAACATAACTGATGCAACTCTTGAAAAGATGCAGTATCTTCATGCCACACTAACAGAGACCTTGAGGCTCTACCTTGCAGTTCCTGTGAATGGGAAGTTTGCAGAGGTAGATGACATTCTTCCTGATGGCTTTAGAGTGAAAAAAGGAGACGGAATAGCTTACATGGCCTATGCCATGGGGAGAATGCCTTACATTTGGGGAGAAGATGCTGAGGATTTCCAACCTGAAAGATGGCTCAATAATGGAGTTTTCAAGCCCGAATCACCTTTCAAATTCATCGCATTTCATCTTTACTTGGGCTACTCGCAGGCAGGACCTCGGACCTGTCTAGGGAAGGACTTTGCTTACATGCAGATTAAGATAGTAGCAATGGCTCTTCTTTGCTTCTTCCGCTTCAAATTGGCTGAAGAAACAAGAAATGTAATTACCTATAGGACCATGTTCACCCTTTCACATAGATGGCACCCTCCCTATGCTTGCACTTCCAAGGACCACCTCACAGATTGTTTTCATATGAAGCAAAAATCCTTCCCATCAAAGATGAATGTTCTCTCTCTCTCTCTCTCTCTCTCGGTCTCAAGTACTAGTATTCTTGATCATGGTAACCAATTACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

285

Amino Acids

32.82

Weight (kDa)

5.85

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 227 2e-44 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 702
AciI CCGC 1 cut(s) 631
AclWI GGATC 2 cut(s) 35, 48
AcsI RAATTY 3 cut(s) 85, 230, 512
AcuI CTGAAG 1 cut(s) 666
AfaI GTAC 1 cut(s) 823
AfiI CCNNNNNNNGG 2 cut(s) 329, 570
AgsI TTSAA 4 cut(s) 263, 493, 511, 637
AhlI ACTAGT 1 cut(s) 824
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 98, 398
AluI AGCT 2 cut(s) 98, 398
Alw26I GTCTC 3 cut(s) 290, 381, 820
AlwI GGATC 2 cut(s) 35, 48
AlwNI CAGNNNCTG 1 cut(s) 323
AoxI GGCC 1 cut(s) 405
ApoI RAATTY 3 cut(s) 85, 230, 512
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AspS9I GGNCC 4 cut(s) 554, 561, 675, 730
AsuHPI GGTGA 3 cut(s) 83, 495, 676
AvaII GGWCC 4 cut(s) 554, 561, 675, 730
BamHI GGATCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 702
BbvCI CCTCAGC 1 cut(s) 450
BccI CCATC 4 cut(s) 359, 465, 693, 781
BciT130I CCWGG 1 cut(s) 69
BclI TGATCA 2 cut(s) 144, 835
BcoDI GTCTC 3 cut(s) 290, 381, 820
BcuI ACTAGT 1 cut(s) 824
BfaI CTAG 2 cut(s) 569, 825
BfmI CTRYAG 1 cut(s) 670
BmcAI AGTACT 1 cut(s) 823
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 4 cut(s) 554, 561, 675, 730
BmgT120I GGNCC 4 cut(s) 554, 561, 675, 730
BmiI GGNNCC 2 cut(s) 42, 704
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 3 cut(s) 241, 258, 436
Bpu10I CCTNAGC 1 cut(s) 450
BpuEI CTTGAG 2 cut(s) 322, 802
BsaI GGTCTC 2 cut(s) 290, 820
BsaJI CCNNGG 3 cut(s) 414, 557, 726
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 570
Bse3DI GCAATG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 3 cut(s) 414, 557, 726
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 329, 570
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 1 cut(s) 441
BshFI GGCC 1 cut(s) 407
BshNI GGYRCC 1 cut(s) 702
BslI CCNNNNNNNGG 2 cut(s) 329, 570
BsmAI GTCTC 3 cut(s) 290, 381, 820
BsmBI CGTCTC 1 cut(s) 381
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 1 cut(s) 407
Bso31I GGTCTC 2 cut(s) 290, 820
Bsp143I GATC 3 cut(s) 40, 144, 835
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 1 cut(s) 631
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 42, 704
BspPI GGATC 2 cut(s) 35, 48
BspQI GCTCTTC 1 cut(s) 621
BspT107I GGYRCC 1 cut(s) 702
BspTNI GGTCTC 2 cut(s) 290, 820
BsrDI GCAATG 1 cut(s) 615
BssECI CCNNGG 3 cut(s) 414, 557, 726
BssMI GATC 3 cut(s) 40, 144, 835
BssT1I CCWWGG 2 cut(s) 414, 726
Bst2UI CCWGG 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 621
BstC8I GCNNGC 3 cut(s) 100, 549, 718
BstDEI CTNAG 1 cut(s) 450
BstDSI CCRYGG 1 cut(s) 414
BstEII GGTNACC 1 cut(s) 842
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 3 cut(s) 43, 147, 838
BstMAI GTCTC 3 cut(s) 290, 381, 820
BstMBI GATC 3 cut(s) 40, 144, 835
BstMWI GCNNNNNNNGC 2 cut(s) 404, 630
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 592
BstPI GGTNACC 1 cut(s) 842
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 670
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 1 cut(s) 407
BtgI CCRYGG 1 cut(s) 414
BtgZI GCGATG 1 cut(s) 502
BtsCI GGATG 1 cut(s) 199
Cac8I GCNNGC 3 cut(s) 100, 549, 718
CaiI CAGNNNCTG 1 cut(s) 323
Cfr13I GGNCC 4 cut(s) 554, 561, 675, 730
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 822
CviAII CATG 8 cut(s) 129, 142, 281, 403, 415, 589, 679, 839
CviQI GTAC 1 cut(s) 822
DdeI CTNAG 1 cut(s) 450
DpnI GATC 3 cut(s) 42, 146, 837
DpnII GATC 3 cut(s) 40, 144, 835
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Eco130I CCWWGG 2 cut(s) 414, 726
Eco31I GGTCTC 2 cut(s) 290, 820
Eco47I GGWCC 4 cut(s) 554, 561, 675, 730
Eco57I CTGAAG 1 cut(s) 666
Eco91I GGTNACC 1 cut(s) 842
EcoO109I RGGNCCY 1 cut(s) 554
EcoO65I GGTNACC 1 cut(s) 842
EcoRII CCWGG 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 414, 726
ErhI CCWWGG 2 cut(s) 414, 726
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 8 cut(s) 132, 145, 284, 406, 418, 592, 682, 842
FatI CATG 8 cut(s) 128, 141, 280, 402, 414, 588, 678, 838
FauNDI CATATG 1 cut(s) 753
FbaI TGATCA 2 cut(s) 144, 835
FokI GGATG 1 cut(s) 206
FspBI CTAG 2 cut(s) 569, 825
HaeIII GGCC 1 cut(s) 407
HgaI GACGC 1 cut(s) 224
Hin1II CATG 8 cut(s) 132, 145, 284, 406, 418, 592, 682, 842
HinfI GANTC 1 cut(s) 500
HphI GGTGA 3 cut(s) 83, 495, 676
Hpy166II GTNNAC 1 cut(s) 684
Hpy188I TCNGA 2 cut(s) 84, 561
Hpy188III TCNNGA 4 cut(s) 44, 260, 362, 833
Hpy8I GTNNAC 1 cut(s) 684
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 4 cut(s) 31, 184, 568, 778
HpyCH4V TGCA 8 cut(s) 116, 179, 254, 271, 317, 341, 592, 720
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 630
HpyF3I CTNAG 1 cut(s) 450
Hsp92II CATG 8 cut(s) 132, 145, 284, 406, 418, 592, 682, 842
Ksp22I TGATCA 2 cut(s) 144, 835
Kzo9I GATC 3 cut(s) 40, 144, 835
LguI GCTCTTC 1 cut(s) 621
LweI GCATC 3 cut(s) 241, 258, 436
MaeI CTAG 2 cut(s) 569, 825
MaeIII GTNAC 2 cut(s) 235, 842
MalI GATC 3 cut(s) 42, 146, 837
MboI GATC 3 cut(s) 40, 144, 835
MboII GAAGA 7 cut(s) 127, 269, 350, 455, 608, 619, 659
MflI RGATCY 1 cut(s) 40
MluCI AATT 7 cut(s) 78, 85, 230, 512, 638, 663, 848
MmeI TCCRAC 1 cut(s) 484
MnlI CCTC 7 cut(s) 168, 297, 337, 445, 567, 717, 746
MseI TTAA 2 cut(s) 597, 856
MslI CAYNNNNRTG 2 cut(s) 127, 697
MspR9I CCNGG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 404, 630
NcoI CCATGG 1 cut(s) 414
NdeI CATATG 1 cut(s) 753
NdeII GATC 3 cut(s) 40, 144, 835
NlaIII CATG 8 cut(s) 132, 145, 284, 406, 418, 592, 682, 842
NlaIV GGNNCC 2 cut(s) 42, 704
NmuCI GTSAC 1 cut(s) 235
NspI RCATGY 1 cut(s) 592
PciSI GCTCTTC 1 cut(s) 621
PctI GAATGC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 500
PpuMI RGGWCCY 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 554
Psp6I CCWGG 1 cut(s) 67
PspEI GGTNACC 1 cut(s) 842
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 42, 704
PspPI GGNCC 4 cut(s) 554, 561, 675, 730
PspPPI RGGWCCY 1 cut(s) 554
PstNI CAGNNNCTG 1 cut(s) 323
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 1 cut(s) 823
RsaNI GTAC 1 cut(s) 822
RseI CAYNNNNRTG 2 cut(s) 127, 697
SapI GCTCTTC 1 cut(s) 621
SaqAI TTAA 2 cut(s) 597, 856
Sau3AI GATC 3 cut(s) 40, 144, 835
Sau96I GGNCC 4 cut(s) 554, 561, 675, 730
ScaI AGTACT 1 cut(s) 823
ScrFI CCNGG 1 cut(s) 69
SfaNI GCATC 3 cut(s) 241, 258, 436
SfcI CTRYAG 1 cut(s) 670
SinI GGWCC 4 cut(s) 554, 561, 675, 730
SmiMI CAYNNNNRTG 2 cut(s) 127, 697
SmlI CTYRAG 2 cut(s) 301, 817
SmoI CTYRAG 2 cut(s) 301, 817
SpeI ACTAGT 1 cut(s) 824
Sse9I AATT 7 cut(s) 78, 85, 230, 512, 638, 663, 848
SsiI CCGC 1 cut(s) 631
SspMI CTAG 2 cut(s) 569, 825
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 2 cut(s) 414, 726
TaqII GACCGA 1 cut(s) 802
TasI AATT 7 cut(s) 78, 85, 230, 512, 638, 663, 848
TatI WGTACW 1 cut(s) 821
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 2 cut(s) 597, 856
Tru9I TTAA 2 cut(s) 597, 856
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 9 cut(s) 68, 221, 243, 269, 505, 515, 740, 770, 797
TspGWI ACGGA 1 cut(s) 405
VpaK11BI GGWCC 4 cut(s) 554, 561, 675, 730
XapI RAATTY 3 cut(s) 85, 230, 512
XceI RCATGY 1 cut(s) 592
XspI CTAG 2 cut(s) 569, 825
ZrmI AGTACT 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.