Rh1DG227900

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000330
Physical Location & Seq
Forward (+)
43821733 .. 43823023
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG227900.1

Sequence Viewer

Length: 351 bp
ATGAGATGTACTTTGGATTCAATGTTCAAAGTTGGGTTTGGAATAGAACTGAATTGCTTGGAGGGTTCAAGCAAAGATGGGATAGAATTTATGAAGGCATTTGATGAGTCCACTGGTTTGACCTATTGGCGATATGTTGATCCATTCTGGCAATTGAAAAGGTTTCTCAATATTGGTTGTGAGGCCGTCCTTAAAAAGTATGTCAAAGTCATTCATGATTTTATGCACCAACATATCAGGAGAAAGAGGGAATTGCTAGCTGTGAAGAAAGATGGTAATGACAAGGAGGACATACTCTCGAGGTTTCTATTGGAGAGTGAGAAGAATCCAGAGGAGATGAATGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

116

Amino Acids

13.74

Weight (kDa)

6.83

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 115 3.2e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 10
AgsI TTSAA 4 cut(s) 21, 28, 69, 157
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
AlwI GGATC 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 298
BccI CCATC 2 cut(s) 71, 266
BceAI ACGGC 1 cut(s) 170
BfaI CTAG 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 298
BmtI GCTAGC 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 347
BshFI GGCC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 298
BsnI GGCC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 298
Bsp143I GATC 1 cut(s) 139
BspANI GGCC 1 cut(s) 185
BspHI TCATGA 1 cut(s) 214
BspOI GCTAGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 118
BssMI GATC 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 258
CciI TCATGA 1 cut(s) 214
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 215
CviJI RGCY 2 cut(s) 185, 260
CviKI_1 RGCY 2 cut(s) 185, 260
CviQI GTAC 1 cut(s) 9
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 298
FaeI CATG 1 cut(s) 218
FaiI YATR 7 cut(s) 92, 135, 201, 216, 224, 234, 293
FatI CATG 1 cut(s) 214
FspBI CTAG 1 cut(s) 257
HaeIII GGCC 1 cut(s) 185
Hin1II CATG 1 cut(s) 218
HinfI GANTC 3 cut(s) 17, 107, 325
Hpy166II GTNNAC 1 cut(s) 111
Hpy188III TCNNGA 4 cut(s) 215, 238, 298, 329
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 226
Hsp92II CATG 1 cut(s) 218
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 4 cut(s) 99, 133, 223, 342
MaeI CTAG 1 cut(s) 257
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 277, 334
MfeI CAATTG 1 cut(s) 152
MluCI AATT 4 cut(s) 52, 86, 152, 251
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 6 cut(s) 55, 175, 240, 280, 294, 325
MseI TTAA 1 cut(s) 192
MunI CAATTG 1 cut(s) 152
NdeII GATC 1 cut(s) 139
NheI GCTAGC 1 cut(s) 256
NlaIII CATG 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 298
PagI TCATGA 1 cut(s) 214
PfeI GAWTC 2 cut(s) 17, 325
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 1 cut(s) 139
SchI GAGTC 1 cut(s) 116
SetI ASST 4 cut(s) 125, 164, 262, 305
Sfr274I CTCGAG 1 cut(s) 298
SlaI CTCGAG 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 4 cut(s) 52, 86, 152, 251
SspI AATATT 1 cut(s) 172
SspMI CTAG 1 cut(s) 257
TaqI TCGA 1 cut(s) 299
TasI AATT 4 cut(s) 52, 86, 152, 251
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 2 cut(s) 17, 325
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 107, 203
TspRI CASTG 1 cut(s) 118
XapI RAATTY 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 298
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.