Rroxscaffold_4G00304190

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000330
Physical Location & Seq
Reverse (-)
24897504 .. 24898182
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00304190.1

Sequence Viewer

Length: 393 bp
ATGGAATTTATGAAGGCATTTGATGAGTCAACTGCTTTGACCTATTGGCGATATGTTGATCCATTATGGCAATTGAAAAGGTTTCTCAATATTGGTTGTGGTGCAGCCCTTAAAAAGTATGTCAAAGTCATTCATGATTTTGTGCACCAACATATCGGGAGAAAAAGGGAATTGCTAGCCGTGAAGAAAGATGGTAATGACAAGGAGGACATACTCTCGAGGTTTCTATTGGAGAGTGAGAAGAATGCAGAGGAGATGAATGATAAATATCTAAGAGGCATAATTTTGAATTTTATGATTTCGGGAAAGATACCGGTGCAAACACACTGTCATGGTTCTTCTACATGCTCTACAAGCACCCTCTCATACAAGAAAAAGTTGCACAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

130

Amino Acids

15.15

Weight (kDa)

9.44

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 2 cut(s) 5, 289
AgeI ACCGGT 1 cut(s) 313
AgsI TTSAA 2 cut(s) 76, 289
Alw21I GWGCWC 1 cut(s) 147
Alw44I GTGCAC 1 cut(s) 143
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 217
ApaLI GTGCAC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 5, 289
ArsI GACNNNNNNTTYG 2 cut(s) 313, 345
AsiGI ACCGGT 1 cut(s) 313
AsuNHI GCTAGC 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 185
BceAI ACGGC 1 cut(s) 164
BfaI CTAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 217
BmtI GCTAGC 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 313
Bse118I RCCGGY 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 267
BseJI GATNNNNATC 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 123
BshTI ACCGGT 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 1 cut(s) 314
BsmI GAATGC 1 cut(s) 250
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 58
BspHI TCATGA 1 cut(s) 133
BspOI GCTAGC 1 cut(s) 179
BspPI GGATC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 313
BssMI GATC 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 272
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 177
CciI TCATGA 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 313
CspAI ACCGGT 1 cut(s) 313
CviAII CATG 3 cut(s) 134, 332, 345
CviJI RGCY 2 cut(s) 107, 179
CviKI_1 RGCY 2 cut(s) 107, 179
DdeI CTNAG 1 cut(s) 272
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 217
FaeI CATG 3 cut(s) 137, 335, 348
FatI CATG 3 cut(s) 133, 331, 344
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 105
HapII CCGG 1 cut(s) 314
Hin1II CATG 3 cut(s) 137, 335, 348
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 30, 145
Hpy188III TCNNGA 4 cut(s) 134, 157, 217, 303
Hpy8I GTNNAC 2 cut(s) 30, 145
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 5 cut(s) 104, 145, 248, 319, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 3 cut(s) 137, 335, 348
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 1 cut(s) 327
Lsp1109I GCAGC 1 cut(s) 116
MaeI CTAG 1 cut(s) 176
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 3 cut(s) 196, 253, 330
MfeI CAATTG 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 5 cut(s) 5, 71, 170, 282, 289
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 5 cut(s) 199, 213, 244, 269, 371
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 1 cut(s) 314
MunI CAATTG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 354
NdeII GATC 1 cut(s) 58
NheI GCTAGC 1 cut(s) 175
NlaIII CATG 3 cut(s) 137, 335, 348
NspI RCATGY 1 cut(s) 348
PaeR7I CTCGAG 1 cut(s) 217
PagI TCATGA 1 cut(s) 133
PctI GAATGC 1 cut(s) 250
PinAI ACCGGT 1 cut(s) 313
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 58
SchI GAGTC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 147
SetI ASST 3 cut(s) 44, 83, 224
Sfr274I CTCGAG 1 cut(s) 217
SlaI CTCGAG 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 5 cut(s) 5, 71, 170, 282, 289
SspI AATATT 1 cut(s) 91
SspMI CTAG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 218
TasI AATT 5 cut(s) 5, 71, 170, 282, 289
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 332
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 26, 122, 272
TspRI CASTG 1 cut(s) 332
VneI GTGCAC 1 cut(s) 143
XapI RAATTY 2 cut(s) 5, 289
XceI RCATGY 1 cut(s) 348
XhoI CTCGAG 1 cut(s) 217
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.