Rh1DG228000

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000330
Physical Location & Seq
Forward (+)
43825586 .. 43844933
19348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG228000.1

Sequence Viewer

Length: 408 bp
ATGAGGTGTACCATGGATTCCATATTCAAAGTTGGGTTTGGAGTAGAACTAAATTGCTTGGAAGGGTCAAGCAAAGAAGGGATAGAATTCATGAAGGCCTTTGATGAGTCGACTGCTCTAACCTCTTGGCGCTTTGTTGATCCCCTCTGGAAATTGAAAAGATTTCTCAACATTGGTTCTGAGGCCACCCTTAAAAAGTATGTCAAAGTCATACGTGATTTTGTGCACCAACTTATCAAGAGCAAGAGGGAATTGCTAGCTGGCCAGAAACATGGTTTTCTTTTCTATGGTATTTCTTGTATAACAAATCGGAGAACTGGGGAAGAAAGAAGTATAGAGCTGGTTATTTGGGAAGAAGTCTATGCACTTGTTATAGAAATCTTGAGGCAAGAGAGTCTGGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

135

Amino Acids

15.71

Weight (kDa)

8.44

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 110
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 10
AgsI TTSAA 2 cut(s) 28, 157
AluBI AGCT 2 cut(s) 260, 340
AluI AGCT 2 cut(s) 260, 340
Alw21I GWGCWC 1 cut(s) 228
Alw44I GTGCAC 1 cut(s) 224
AlwI GGATC 1 cut(s) 134
AoxI GGCC 3 cut(s) 96, 183, 262
ApaLI GTGCAC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 132
AsuNHI GCTAGC 1 cut(s) 256
BaeGI GKGCMC 1 cut(s) 228
BalI TGGCCA 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 228
BfaI CTAG 1 cut(s) 257
BfoI RGCGCY 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 327
BmtI GCTAGC 1 cut(s) 260
BmuI ACTGGG 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 403
BsaAI YACGTR 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 322
BseSI GKGCMC 1 cut(s) 228
BshFI GGCC 3 cut(s) 98, 185, 264
BsiHKAI GWGCWC 1 cut(s) 228
BsnI GGCC 3 cut(s) 98, 185, 264
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 12
BspANI GGCC 3 cut(s) 98, 185, 264
BspCNI CTCAG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 90
BspOI GCTAGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 12
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 258, 262
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 12
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 272
BsuRI GGCC 3 cut(s) 98, 185, 264
BtgI CCRYGG 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 258, 262
CciI TCATGA 1 cut(s) 90
CfoI GCGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 9
CviAII CATG 3 cut(s) 13, 91, 272
CviJI RGCY 5 cut(s) 98, 185, 260, 264, 340
CviKI_1 RGCY 5 cut(s) 98, 185, 260, 264, 340
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 16, 94, 275
FatI CATG 3 cut(s) 12, 90, 271
FblI GTMKAC 1 cut(s) 110
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 3 cut(s) 98, 185, 264
HhaI GCGC 1 cut(s) 132
Hin1II CATG 3 cut(s) 16, 94, 275
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 3 cut(s) 17, 107, 394
Hpy166II GTNNAC 3 cut(s) 9, 111, 226
Hpy188I TCNGA 2 cut(s) 181, 312
Hpy188III TCNNGA 5 cut(s) 91, 148, 238, 382, 398
Hpy8I GTNNAC 3 cut(s) 9, 111, 226
HpyAV CCTTC 3 cut(s) 56, 71, 88
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 226, 365
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 3 cut(s) 16, 94, 275
HspAI GCGC 1 cut(s) 130
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 133, 246, 278, 303, 326, 383
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 214
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 335, 365
MhlI GDGCHC 1 cut(s) 228
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 4 cut(s) 52, 86, 152, 251
MluNI TGGCCA 1 cut(s) 264
MlyI GAGTC 2 cut(s) 116, 403
MnlI CCTC 5 cut(s) 133, 155, 175, 240, 378
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
MseI TTAA 1 cut(s) 192
Msp20I TGGCCA 1 cut(s) 264
NcoI CCATGG 1 cut(s) 12
NdeII GATC 1 cut(s) 139
NheI GCTAGC 1 cut(s) 256
NlaIII CATG 3 cut(s) 16, 94, 275
PagI TCATGA 1 cut(s) 90
PceI AGGCCT 1 cut(s) 98
PfeI GAWTC 1 cut(s) 17
PleI GAGTC 2 cut(s) 115, 402
PpsI GAGTC 2 cut(s) 115, 402
Ppu21I YACGTR 1 cut(s) 215
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SalI GTCGAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 1 cut(s) 139
SchI GAGTC 2 cut(s) 116, 403
SduI GDGCHC 1 cut(s) 228
SetI ASST 5 cut(s) 8, 125, 217, 262, 342
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 4 cut(s) 52, 86, 152, 251
SseBI AGGCCT 1 cut(s) 98
SspMI CTAG 1 cut(s) 257
StuI AGGCCT 1 cut(s) 98
StyI CCWWGG 1 cut(s) 12
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 110
TasI AATT 4 cut(s) 52, 86, 152, 251
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 79, 107
VneI GTGCAC 1 cut(s) 224
XapI RAATTY 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 110
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.