Rh1AG230800

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000330
Physical Location & Seq
Forward (+)
43773283 .. 43775070
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG230800.1

Sequence Viewer

Length: 216 bp
ATGCAGGCTGGTCCTCGGATCTGTCTAGGGAAGGACTTTGCCTACCGGCAGATGAAGATATTAGCAATGGCTCTTCTTTACTTCTTCCGCTTCAAATTGGCCGATGAAGCAAGAGAAGTAAACTACAGGACCATGTTCACCCTTCACATTGATGGCAGTCTCCCCATGCTTGCAGTTCGAAGGACAATGGACTCATATATACAAGTAAATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

71

Amino Acids

8.39

Weight (kDa)

9.89

Isoelectric Point (pI)

22.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 49 1.1e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 88
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 99
AgsI TTSAA 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 26
AoxI GGCC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 11, 129
AsuHPI GGTGA 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 178
AvaII GGWCC 2 cut(s) 11, 129
BccI CCATC 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 124
Bme18I GGWCC 2 cut(s) 11, 129
BmgT120I GGNCC 2 cut(s) 11, 129
Bpu14I TTCGAA 1 cut(s) 178
Bsa29I ATCGAT 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 14
BseMI GCAATG 1 cut(s) 72
BshFI GGCC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 211
BsiSI CCGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 178
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 1 cut(s) 88
BspANI GGCC 1 cut(s) 101
BspDI ATCGAT 1 cut(s) 211
BspPI GGATC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 78
BspT104I TTCGAA 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 78
BstBI TTCGAA 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 6, 171
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
Bsu15I ATCGAT 1 cut(s) 211
BsuRI GGCC 1 cut(s) 101
BsuTUI ATCGAT 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 6, 171
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 11, 129
ClaI ATCGAT 1 cut(s) 211
CviAII CATG 2 cut(s) 133, 166
CviJI RGCY 3 cut(s) 8, 71, 101
CviKI_1 RGCY 3 cut(s) 8, 71, 101
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 11, 129
FaeI CATG 2 cut(s) 136, 169
FaiI YATR 5 cut(s) 134, 167, 196, 198, 200
FatI CATG 2 cut(s) 132, 165
FspBI CTAG 1 cut(s) 26
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 46
Hin1II CATG 2 cut(s) 136, 169
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 121, 138
Hpy188I TCNGA 1 cut(s) 18
Hpy8I GTNNAC 2 cut(s) 121, 138
HpyAV CCTTC 3 cut(s) 25, 152, 174
HpyCH4V TGCA 2 cut(s) 4, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 136, 169
Kzo9I GATC 1 cut(s) 18
LguI GCTCTTC 1 cut(s) 78
LpnPI CCDG 2 cut(s) 59, 112
MaeI CTAG 1 cut(s) 26
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 3 cut(s) 65, 67, 76
MflI RGATCY 1 cut(s) 18
MluCI AATT 1 cut(s) 95
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 150
MspI CCGG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 1 cut(s) 18
NlaIII CATG 2 cut(s) 136, 169
NspV TTCGAA 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 78
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PspPI GGNCC 2 cut(s) 11, 129
PsuI RGATCY 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 2 cut(s) 11, 129
SchI GAGTC 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 178
SinI GGWCC 2 cut(s) 11, 129
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 1 cut(s) 95
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 26
TaqI TCGA 2 cut(s) 178, 211
TasI AATT 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 68, 120
VpaK11BI GGWCC 2 cut(s) 11, 129
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.