Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006183

Physical Location & Seq

Genomic Coordinates Reverse (-)

2892958 .. 2893485

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0023300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGGTTTAGCAAGCTTTTCTTTGGTGTATGCTGCTTAGCAGTAATCATTATATTTCATGTCTCTCAAGCTACAGTAATTAACAATCCCAACCAAGGCTTCATTGATGAACAGAACAACAATCCCAACCAAGGCTTCATTGATGAACACAACAAAGCTCGAGCAGAGGTCGGTGTTGGTCCAATCACATGGAACAACACAGTAGCAATGTACGCACAAAAGTATGCCGATTCAAAAATTGAGACCTGCGAAATGGAGCATTCTGGAGGACCCTATGGCGAGAACTTGGCTGAAGGTTATGGTGAAATGACGGGTGCGCAAGCTGTGAAGTTTTGGGTGACAGAGAAGCCTAACTATGACCGTGCCTCTAACAAATGTGTTAATGATGAATGTTTGCATTATACACAAGTGGTTTGGCGCGATTCTGTTCATCTTGGTTGTGCTAGGGCCAAGTGTAAAAATGGGTGGGTGTTTGTAATTTGTAACTATGATCCTCCTGGTAACTATATTGGAGAGCGTCCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

175

Amino Acids

19.6

Weight (kDa)

5.49

Isoelectric Point (pI)

25.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	48 - 163	9e-21	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45500 AT2G45500 AT2G45500 AT2G45500 AT2G45500
fragaria_vesca	FvH4_7g12180 FvH4_7g12180
malus_domestica	MD02G1200800.v1.1
prunus_persica	Prupe.2G148300_v2.0.a1 Prupe.2G148300_v2.0.a1 Prupe.2G148300_v2.0.a1
pyrus_communis	pycom02g16400
rosa_chinensis	RchiOBHm_Chr1g0350931
rosa_laevigata	RLG00000028440
rosa_multiflora	Rmu_sc0002665.1_g000019 Rmu_sc0006458.1_g000018
rosa_roxburghii	Rroxscaffold_4G00304290
rosa_rugosa	Rorug01G0075600 Rorug01G0215400 Rorug01G0215400 Rorug06G0023300
rosa_samantha	Rh1AG230100 Rh1BG075200 Rh1BG200000 Rh1CG214500 Rh1DG227800
rosa_wichuraiana	Rw1G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	254
AccII	CGCG	1 cut(s)	420
AclWI	GGATC	1 cut(s)	485
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	95, 131
AgsI	TTSAA	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	4 cut(s)	83, 115, 119, 151
AluBI	AGCT	4 cut(s)	16, 71, 158, 323
AluI	AGCT	4 cut(s)	16, 71, 158, 323
Alw26I	GTCTC	2 cut(s)	67, 236
AlwI	GGATC	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	1 cut(s)	447
ApeKI	GCWGC	1 cut(s)	33
AspLEI	GCGC	2 cut(s)	319, 420
AspS9I	GGNCC	3 cut(s)	179, 269, 447
AsuHPI	GGTGA	2 cut(s)	314, 349
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	2 cut(s)	179, 269
BbvI	GCAGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	2 cut(s)	67, 236
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	34
BlpI	GCTNAGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	2 cut(s)	179, 269
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	3 cut(s)	179, 269, 447
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	285
Bpu1102I	GCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	94, 130
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 131
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	2 cut(s)	94, 130
BseLI	CCNNNNNNNGG	2 cut(s)	95, 131
BseMI	GCAATG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	95, 131
BsmAI	GTCTC	2 cut(s)	67, 236
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	449
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	490
Bsp1720I	GCTNAGC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	94, 130
BssMI	GATC	1 cut(s)	490
BssT1I	CCWWGG	2 cut(s)	94, 130
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	3 cut(s)	76, 202, 362
BstC8I	GCNNGC	2 cut(s)	14, 321
BstDEI	CTNAG	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	420
BstHHI	GCGC	2 cut(s)	319, 420
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	2 cut(s)	67, 236
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	449
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	14, 321
CfoI	GCGC	2 cut(s)	319, 420
Cfr13I	GGNCC	3 cut(s)	179, 269, 447
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	2 cut(s)	59, 189
CviJI	RGCY	9 cut(s)	16, 71, 99, 135, 158, 290, 323, 349, 449
CviKI_1	RGCY	9 cut(s)	16, 71, 99, 135, 158, 290, 323, 349, 449
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
Eco130I	CCWWGG	2 cut(s)	94, 130
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	179, 269
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	2 cut(s)	94, 130
ErhI	CCWWGG	2 cut(s)	94, 130
FaeI	CATG	2 cut(s)	62, 192
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	2 cut(s)	58, 188
Fnu4HI	GCNGC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	1 cut(s)	444
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	2 cut(s)	318, 419
GluI	GCNGC	1 cut(s)	34
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	449
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	2 cut(s)	319, 420
Hin1II	CATG	2 cut(s)	62, 192
Hin6I	GCGC	2 cut(s)	317, 418
HinP1I	GCGC	2 cut(s)	317, 418
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	2 cut(s)	230, 422
HphI	GGTGA	2 cut(s)	314, 349
Hpy188III	TCNNGA	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	3 cut(s)	76, 202, 362
HpyCH4V	TGCA	1 cut(s)	397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	62, 192
HspAI	GCGC	2 cut(s)	317, 418
Kzo9I	GATC	1 cut(s)	490
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	4 cut(s)	249, 259, 483, 510
Lsp1109I	GCAGC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	3 cut(s)	337, 482, 500
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MluCI	AATT	3 cut(s)	78, 237, 477
MnlI	CCTC	4 cut(s)	160, 260, 376, 504
MseI	TTAA	2 cut(s)	81, 381
MspR9I	CCNGG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	2 cut(s)	62, 192
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	337
NsbI	TGCGCA	1 cut(s)	318
PaeR7I	CTCGAG	1 cut(s)	159
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	230, 422
PkrI	GCNGC	1 cut(s)	35
PpuMI	RGGWCCY	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	3 cut(s)	179, 269, 447
PspPPI	RGGWCCY	1 cut(s)	269
PspXI	VCTCGAGB	1 cut(s)	159
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	81, 381
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	3 cut(s)	179, 269, 447
ScrFI	CCNGG	1 cut(s)	498
SetI	ASST	7 cut(s)	18, 73, 160, 171, 248, 298, 325
SfcI	CTRYAG	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	159
SinI	GGWCC	2 cut(s)	179, 269
SlaI	CTCGAG	1 cut(s)	159
SmlI	CTYRAG	2 cut(s)	66, 159
SmoI	CTYRAG	2 cut(s)	66, 159
Sse9I	AATT	3 cut(s)	78, 237, 477
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	2 cut(s)	94, 130
TaaI	ACNGT	3 cut(s)	76, 202, 362
TaqI	TCGA	1 cut(s)	160
TasI	AATT	3 cut(s)	78, 237, 477
TfiI	GAWTC	2 cut(s)	230, 422
Tru1I	TTAA	2 cut(s)	81, 381
Tru9I	TTAA	2 cut(s)	81, 381
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	7 cut(s)	47, 91, 123, 127, 159, 402, 419
VpaK11BI	GGWCC	2 cut(s)	179, 269
XhoI	CTCGAG	1 cut(s)	159
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.