AT2G45660

K-box region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006997
Physical Location & Seq
Reverse (-)
18807505 .. 18811125
3621 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45660.1

Sequence Viewer

Length: 645 bp
ATGGTGAGGGGCAAAACTCAGATGAAGAGAATAGAGAATGCAACAAGCAGACAAGTGACTTTCTCCAAAAGAAGGAATGGTTTGTTGAAGAAAGCCTTTGAGCTCTCAGTGCTTTGTGATGCTGAAGTTTCTCTTATCATCTTCTCTCCTAAAGGCAAACTTTATGAATTCGCCAGCTCCAATATGCAAGATACCATAGATCGTTATCTGAGGCATACTAAGGATCGAGTCAGCACCAAACCGGTTTCTGAAGAAAATATGCAGCATTTGAAATATGAAGCAGCAAACATGATGAAGAAAATTGAACAACTCGAAGCTTCTAAACGTAAACTCTTGGGAGAAGGCATAGGAACATGCTCAATCGAGGAGCTGCAACAGATTGAGCAACAGCTTGAGAAAAGTGTCAAATGTATTCGAGCAAGAAAGACTCAAGTGTTTAAGGAACAAATTGAGCAGCTCAAGCAAAAGGAGAAAGCTCTAGCTGCAGAAAACGAGAAGCTCTCTGAAAAGTGGGGATCTCATGAAAGCGAAGTTTGGTCAAATAAGAATCAAGAAAGTACTGGAAGAGGTGATGAAGAGAGTAGCCCAAGTTCTGAAGTAGAGACGCAATTGTTCATTGGGTTACCTTGTTCTTCAAGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

214

Amino Acids

24.53

Weight (kDa)

9.06

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 9.7e-27 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 83 - 171 1.3e-27 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 231, 523
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 3 cut(s) 144, 270, 615
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 1 cut(s) 72
AgeI ACCGGT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 88, 271, 305, 636
AluBI AGCT 9 cut(s) 103, 177, 317, 370, 391, 457, 476, 482, 499
AluI AGCT 9 cut(s) 103, 177, 317, 370, 391, 457, 476, 482, 499
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 596
AlwI GGATC 2 cut(s) 231, 523
ApeKI GCWGC 5 cut(s) 262, 281, 370, 454, 482
ApoI RAATTY 1 cut(s) 167
AsiGI ACCGGT 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 16, 581
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 5 cut(s) 274, 293, 357, 466, 469
BcoDI GTCTC 1 cut(s) 596
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 1 cut(s) 483
BisI GCNGC 5 cut(s) 263, 282, 371, 455, 483
BlsI GCNGC 5 cut(s) 264, 283, 372, 456, 484
BmcAI AGTACT 1 cut(s) 559
BmsI GCATC 1 cut(s) 109
BplI GAGNNNNNCTC 2 cut(s) 485, 517
BpuEI CTTGAG 3 cut(s) 413, 414, 443
BsaBI GATNNNNATC 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 565
Bse8I GATNNNNATC 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 3 cut(s) 32, 120, 200
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 5 cut(s) 274, 293, 357, 466, 469
BshTI ACCGGT 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 596
BsmBI CGTCTC 1 cut(s) 596
BsmI GAATGC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 3 cut(s) 199, 223, 515
BspCNI CTCAG 3 cut(s) 31, 119, 201
BspHI TCATGA 1 cut(s) 520
BspMAI CTGCAG 1 cut(s) 487
BspPI GGATC 2 cut(s) 231, 523
BsrFI RCCGGY 1 cut(s) 241
BsrI ACTGG 1 cut(s) 565
BssAI RCCGGY 1 cut(s) 241
BssMI GATC 3 cut(s) 199, 223, 515
Bst6I CTCTTC 3 cut(s) 20, 559, 570
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 4 cut(s) 18, 106, 209, 219
BstEII GGTNACC 1 cut(s) 621
BstKTI GATC 3 cut(s) 202, 226, 518
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 3 cut(s) 199, 223, 515
BstMWI GCNNNNNNNGC 3 cut(s) 109, 460, 482
BstNSI RCATGY 1 cut(s) 357
BstPI GGTNACC 1 cut(s) 621
BstSFI CTRYAG 1 cut(s) 483
BstV1I GCAGC 5 cut(s) 274, 293, 357, 466, 469
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 175
CciI TCATGA 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 241
CseI GACGC 1 cut(s) 613
Csp6I GTAC 1 cut(s) 558
CspAI ACCGGT 1 cut(s) 241
CviAII CATG 3 cut(s) 289, 354, 521
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 4 cut(s) 18, 106, 209, 219
DpnI GATC 3 cut(s) 201, 225, 517
DpnII GATC 3 cut(s) 199, 223, 515
Eam1104I CTCTTC 3 cut(s) 20, 559, 570
EarI CTCTTC 3 cut(s) 20, 559, 570
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 3 cut(s) 144, 270, 615
Eco91I GGTNACC 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 103
EcoO65I GGTNACC 1 cut(s) 621
EcoRI GAATTC 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 596
FaeI CATG 3 cut(s) 292, 357, 524
FalI AAGNNNNNCTT 6 cut(s) 80, 112, 117, 149, 144, 176
FatI CATG 3 cut(s) 288, 353, 520
Fnu4HI GCNGC 5 cut(s) 263, 282, 371, 455, 483
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 5 cut(s) 263, 282, 371, 455, 483
FspBI CTAG 1 cut(s) 479
GluI GCNGC 5 cut(s) 263, 282, 371, 455, 483
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 613
Hin1II CATG 3 cut(s) 292, 357, 524
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 3 cut(s) 228, 427, 547
HpaII CCGG 1 cut(s) 242
HphI GGTGA 2 cut(s) 16, 581
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 5 cut(s) 21, 210, 250, 505, 595
Hpy188III TCNNGA 3 cut(s) 521, 551, 636
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 66, 335
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 5 cut(s) 41, 187, 262, 373, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 460, 482
HpyF3I CTNAG 4 cut(s) 18, 106, 209, 219
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 3 cut(s) 292, 357, 524
Kzo9I GATC 3 cut(s) 199, 223, 515
LmnI GCTCC 2 cut(s) 182, 367
LpnPI CCDG 3 cut(s) 187, 255, 546
Lsp1109I GCAGC 5 cut(s) 274, 293, 357, 466, 469
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 479
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 55, 621
MalI GATC 3 cut(s) 201, 225, 517
MboI GATC 3 cut(s) 199, 223, 515
MboII GAAGA 8 cut(s) 37, 100, 133, 263, 307, 576, 587, 624
MfeI CAATTG 1 cut(s) 608
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 4 cut(s) 167, 300, 447, 608
MlyI GAGTC 2 cut(s) 237, 421
MnlI CCTC 3 cut(s) 204, 358, 560
MseI TTAA 1 cut(s) 438
MspI CCGG 1 cut(s) 242
MunI CAATTG 1 cut(s) 608
Mva1269I GAATGC 1 cut(s) 43
MwoI GCNNNNNNNGC 3 cut(s) 109, 460, 482
NdeII GATC 3 cut(s) 199, 223, 515
NlaIII CATG 3 cut(s) 292, 357, 524
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 357
PagI TCATGA 1 cut(s) 520
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 547
PinAI ACCGGT 1 cut(s) 241
PkrI GCNGC 5 cut(s) 264, 283, 372, 456, 484
PleI GAGTC 2 cut(s) 236, 421
PpsI GAGTC 2 cut(s) 236, 421
Psp124BI GAGCTC 1 cut(s) 105
PspEI GGTNACC 1 cut(s) 621
PsrI GAACNNNNNNTAC 2 cut(s) 574, 606
PstI CTGCAG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 515
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 5 cut(s) 263, 282, 371, 455, 483
Sau3AI GATC 3 cut(s) 199, 223, 515
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 2 cut(s) 237, 421
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 483
SmlI CTYRAG 3 cut(s) 392, 429, 458
SmoI CTYRAG 3 cut(s) 392, 429, 458
Sse9I AATT 4 cut(s) 167, 300, 447, 608
SspMI CTAG 1 cut(s) 479
SstI GAGCTC 1 cut(s) 105
TaiI ACGT 1 cut(s) 328
TaqI TCGA 4 cut(s) 226, 312, 363, 415
TasI AATT 4 cut(s) 167, 300, 447, 608
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 5 cut(s) 262, 281, 370, 454, 482
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 7 cut(s) 38, 180, 291, 308, 537, 588, 604
TspRI CASTG 1 cut(s) 114
XapI RAATTY 1 cut(s) 167
XceI RCATGY 1 cut(s) 357
XspI CTAG 1 cut(s) 479
ZrmI AGTACT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.