Rh1DG232300
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006997
Physical Location & Seq
Reverse (-)
44553593 .. 44563327
9735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG232300.1

Sequence Viewer

Length: 645 bp
ATGGTGCGAGGCAAAACCCAGATGAGGCGGATAGAGAACGCCACGAGCCGTCAAGTCACCTTCTCGAAGCGGCGAAGCGGTCTTCTGAAGAAGGCTTTCGAGCTCTCCATTCTCTGCGACGCTGAGGTTGCGCTCATCATCTTCTCTCCGAGAGGAAAGCTCTACGAATTCGCAAGCTCCAGCATGCAGACAACTATAGAACGTTATGAGAAGCATACAAAAGACAACCAAGCCAACAACAAATCTGTTGCCAGTGAACAAAATGTGCAGCTCAAGCATGAAGCAACTAGCATGATGAAGCAGATAGAGCATCTTGAAGTTTCGAAACGGAAACTATTGGGAGAGAGTCTAGGACTATGCAGCATTGACGAACTGCAAGAAATAGAGCAACAGTTGGAGAGGAGTGTGAACAGCATTCGAGCAAGGAAGGCACAGGTTTACAAGGAACAGATTGAGCAATTGAGAGAAAAGGAAAGAGTCCTCACAGCTGAAAATCAGAGGCTAAATGAGAAGTGTGAGACCATGCAACCGAGGCAACCAGTAAGTGAGCAGAGAGAAAACTTAGCCTGCACTGAAAGTAGTCCAAGTTCAGATGTTGAGACTGAATTGTTCATTGGACTGCCAGAAAGAAGATCGAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

214

Amino Acids

24.73

Weight (kDa)

8.86

Isoelectric Point (pI)

66.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 6.3e-27 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 86 - 172 1.1e-24 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 28, 70, 78
AclI AACGTT 1 cut(s) 202
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 1 cut(s) 317
AjuI GAANNNNNNNTTGG 2 cut(s) 597, 629
AluBI AGCT 5 cut(s) 103, 160, 177, 271, 488
AluI AGCT 5 cut(s) 103, 160, 177, 271, 488
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 512, 593
ApeKI GCWGC 2 cut(s) 268, 360
ApoI RAATTY 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 323
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 280, 372
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 512, 593
BfaI CTAG 3 cut(s) 288, 350, 643
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 3 cut(s) 71, 269, 361
BlsI GCNGC 3 cut(s) 72, 270, 362
BmsI GCATC 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 74
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 530
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 252, 539
BseDI CCNNGG 1 cut(s) 530
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 252, 539
BseRI GAGGAG 1 cut(s) 415
BseXI GCAGC 2 cut(s) 280, 372
BsgI GTGCAG 2 cut(s) 287, 553
BsiHKAI GWGCWC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 512, 593
BsmI GAATGC 1 cut(s) 414
Bso31I GGTCTC 1 cut(s) 512
Bsp119I TTCGAA 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 632
BspACI CCGC 3 cut(s) 28, 70, 78
BspCNI CTCAG 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 512
BsrI ACTGG 2 cut(s) 252, 539
BssECI CCNNGG 1 cut(s) 530
BssMI GATC 1 cut(s) 632
BssSI CACGAG 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 393
BstBI TTCGAA 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 175, 185, 568
BstDEI CTNAG 2 cut(s) 123, 562
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 635
BstMAI GTCTC 2 cut(s) 512, 593
BstMBI GATC 1 cut(s) 632
BstMWI GCNNNNNNNGC 5 cut(s) 128, 274, 307, 428, 532
BstNSI RCATGY 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 280, 372
BstV2I GAAGAC 1 cut(s) 74
BtsIMutI CAGTG 2 cut(s) 259, 570
Cac8I GCNNGC 3 cut(s) 175, 185, 568
CfoI GCGC 1 cut(s) 133
CseI GACGC 1 cut(s) 128
CviAII CATG 4 cut(s) 184, 278, 292, 523
DdeI CTNAG 2 cut(s) 123, 562
DpnI GATC 1 cut(s) 634
DpnII GATC 1 cut(s) 632
EciI GGCGGA 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 512
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 4 cut(s) 187, 281, 295, 526
FaiI YATR 8 cut(s) 185, 197, 207, 216, 279, 293, 358, 524
FatI CATG 4 cut(s) 183, 277, 291, 522
Fnu4HI GCNGC 3 cut(s) 71, 269, 361
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 3 cut(s) 71, 269, 361
FspBI CTAG 3 cut(s) 288, 350, 643
GlaI GCGC 1 cut(s) 132
GluI GCNGC 3 cut(s) 71, 269, 361
GsuI CTGGAG 1 cut(s) 163
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 133
Hin1II CATG 4 cut(s) 187, 281, 295, 526
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 2 cut(s) 346, 477
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 3 cut(s) 257, 409, 439
Hpy188I TCNGA 4 cut(s) 87, 150, 498, 592
Hpy188III TCNNGA 2 cut(s) 64, 314
Hpy8I GTNNAC 3 cut(s) 257, 409, 439
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 3 cut(s) 70, 85, 421
HpyCH4III ACNGT 1 cut(s) 393
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 6 cut(s) 187, 268, 360, 376, 526, 570
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 274, 307, 428, 532
HpyF3I CTNAG 2 cut(s) 123, 562
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 4 cut(s) 187, 281, 295, 526
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 1 cut(s) 632
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 7 cut(s) 32, 193, 265, 419, 552, 580, 636
Lsp1109I GCAGC 2 cut(s) 280, 372
LweI GCATC 1 cut(s) 319
MaeI CTAG 3 cut(s) 288, 350, 643
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 634
MboI GATC 1 cut(s) 632
MboII GAAGA 4 cut(s) 74, 100, 133, 642
MfeI CAATTG 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 3 cut(s) 167, 458, 605
MlyI GAGTC 2 cut(s) 355, 486
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 7 cut(s) 18, 118, 146, 393, 491, 492, 525
MroXI GAANNNNTTC 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 488
MunI CAATTG 1 cut(s) 458
Mva1269I GAATGC 1 cut(s) 414
MwoI GCNNNNNNNGC 5 cut(s) 128, 274, 307, 428, 532
NdeII GATC 1 cut(s) 632
NlaIII CATG 4 cut(s) 187, 281, 295, 526
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 187
NspV TTCGAA 1 cut(s) 323
PaeI GCATGC 1 cut(s) 187
PctI GAATGC 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 95
PkrI GCNGC 3 cut(s) 72, 270, 362
PleI GAGTC 2 cut(s) 354, 485
PpsI GAGTC 2 cut(s) 354, 485
Psp124BI GAGCTC 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 202
PsrI GAACNNNNNNTAC 2 cut(s) 571, 603
PvuII CAGCTG 1 cut(s) 488
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 3 cut(s) 71, 269, 361
Sau3AI GATC 1 cut(s) 632
SchI GAGTC 2 cut(s) 355, 486
SduI GDGCHC 1 cut(s) 105
SetI ASST 9 cut(s) 62, 105, 129, 162, 179, 205, 273, 438, 490
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SphI GCATGC 1 cut(s) 187
Sse9I AATT 3 cut(s) 167, 458, 605
SsiI CCGC 3 cut(s) 28, 70, 78
SspMI CTAG 3 cut(s) 288, 350, 643
SstI GAGCTC 1 cut(s) 105
TaaI ACNGT 1 cut(s) 393
TaiI ACGT 1 cut(s) 205
TaqI TCGA 5 cut(s) 65, 99, 323, 418, 635
TasI AATT 3 cut(s) 167, 458, 605
TauI GCSGC 1 cut(s) 73
TscAI CASTG 2 cut(s) 259, 577
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 268, 360
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 294, 311, 601
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 2 cut(s) 259, 577
XapI RAATTY 1 cut(s) 167
XceI RCATGY 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 3 cut(s) 288, 350, 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.