pycom07g11630
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0006997
Physical Location & Seq
Reverse (-)
12741425 .. 12747737
6313 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g11630.5

Sequence Viewer

Length: 555 bp
ATGCTGAGGTTTCCCTCATCATCTTCTCTCCCAGAGGAAAACTCTTCGAATTTGCAAGTTCCAGTACTTGGAATTGGTTATAAACTCAGCATGCAGGGAACCATAGAGCGATATCAGAAGCACGCGAAAGGCAATCAAACCAGCAACGAATCCAGTTCCAGTGAACAAAATATGCAGCATCTGAAGCAAAAAGCAACTAGCATGATGAAACAGTTAGAGCTTCTTGAAGTATCAAAACGGAAACTCTTGGGAGAGGGTCTAGGATCATGCACTCTTGCAGAGCTACAAGAAATAGAGCACCAGTTGGAGAAGAGCGTGAACAATGTCCGAGCCCGAAAGAGTCAGGTTTTCAAGGAACAGATTGAGCAACTGAGAGAAAAGGAGAAACTCCTCAAAGCTGAAACTGCACAACTGGTTGAGAAGTGTGGTAGTTTCCAGCCAAGGAAAACATTGGACGAGCGAAGAGAAAACACAACCTACACTGATAGTAGTACAAGCTCAGATGTTGAGACTGAATTGTTCATTGGACCGCCAGAAAGTAGAGCGAGGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

185

Amino Acids

20.89

Weight (kDa)

8.49

Isoelectric Point (pI)

59.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 68
AccII CGCG 1 cut(s) 125
AciI CCGC 1 cut(s) 530
AclWI GGATC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 66, 493
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 2 cut(s) 227, 352
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AluBI AGCT 4 cut(s) 220, 283, 398, 498
AluI AGCT 4 cut(s) 220, 283, 398, 498
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 503
AlwI GGATC 1 cut(s) 271
AlwNI CAGNNNCTG 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 49
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 1 cut(s) 527
AsuII TTCGAA 1 cut(s) 47
AvaII GGWCC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 503
BfaI CTAG 3 cut(s) 198, 260, 553
BfoI RGCGCY 1 cut(s) 553
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
BmcAI AGTACT 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu10I CCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 440
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 5 cut(s) 62, 153, 159, 301, 417
BseDI CCNNGG 1 cut(s) 440
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 3 cut(s) 100, 362, 513
BseNI ACTGG 5 cut(s) 62, 153, 159, 301, 417
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 503
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 300, 334
Bsp143I GATC 1 cut(s) 263
BspACI CCGC 1 cut(s) 530
BspCNI CTCAG 3 cut(s) 99, 363, 512
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 271
BspQI GCTCTTC 1 cut(s) 305
BspT104I TTCGAA 1 cut(s) 47
BsrI ACTGG 5 cut(s) 62, 153, 159, 301, 417
BssECI CCNNGG 1 cut(s) 440
BssMI GATC 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 440
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 3 cut(s) 49, 305, 457
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 92, 123
BstDEI CTNAG 4 cut(s) 5, 86, 371, 499
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 1 cut(s) 263
BstMWI GCNNNNNNNGC 2 cut(s) 184, 404
BstNSI RCATGY 1 cut(s) 94
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 187
BtsIMutI CAGTG 2 cut(s) 166, 480
Cac8I GCNNGC 2 cut(s) 92, 123
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 1 cut(s) 552
Cfr13I GGNCC 1 cut(s) 527
Csp6I GTAC 2 cut(s) 65, 492
CviAII CATG 3 cut(s) 91, 202, 267
CviJI RGCY 6 cut(s) 220, 283, 332, 398, 439, 498
CviKI_1 RGCY 6 cut(s) 220, 283, 332, 398, 439, 498
CviQI GTAC 2 cut(s) 65, 492
DdeI CTNAG 4 cut(s) 5, 86, 371, 499
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
Eam1104I CTCTTC 3 cut(s) 49, 305, 457
EarI CTCTTC 3 cut(s) 49, 305, 457
Eco130I CCWWGG 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 334
Eco32I GATATC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 203
EcoRV GATATC 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 440
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 440
FaeI CATG 3 cut(s) 94, 205, 270
FaiI YATR 6 cut(s) 81, 92, 104, 173, 203, 268
FatI CATG 3 cut(s) 90, 201, 266
Fnu4HI GCNGC 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 3 cut(s) 198, 260, 553
GlaI GCGC 1 cut(s) 551
GluI GCNGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 553
HhaI GCGC 1 cut(s) 552
Hin1II CATG 3 cut(s) 94, 205, 270
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HinfI GANTC 2 cut(s) 149, 340
Hpy166II GTNNAC 2 cut(s) 164, 319
Hpy188I TCNGA 4 cut(s) 117, 183, 329, 502
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 2 cut(s) 164, 319
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4V TGCA 6 cut(s) 55, 94, 175, 270, 278, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 404
HpyF3I CTNAG 4 cut(s) 5, 86, 371, 499
Hsp92II CATG 3 cut(s) 94, 205, 270
HspAI GCGC 1 cut(s) 550
Kzo9I GATC 1 cut(s) 263
LguI GCTCTTC 1 cut(s) 305
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 187
MaeI CTAG 3 cut(s) 198, 260, 553
MalI GATC 1 cut(s) 265
MboI GATC 1 cut(s) 263
MboII GAAGA 4 cut(s) 15, 36, 322, 474
MhlI GDGCHC 2 cut(s) 300, 334
MluCI AATT 3 cut(s) 49, 72, 515
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 5 cut(s) 25, 28, 247, 401, 540
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 184, 404
NdeII GATC 1 cut(s) 263
NlaIII CATG 3 cut(s) 94, 205, 270
NlaIV GGNNCC 1 cut(s) 100
NspI RCATGY 1 cut(s) 94
NspV TTCGAA 1 cut(s) 47
PaeI GCATGC 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 68
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
PsiI TTATAA 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 527
PstNI CAGNNNCTG 1 cut(s) 181
RsaI GTAC 2 cut(s) 66, 493
RsaNI GTAC 2 cut(s) 65, 492
SapI GCTCTTC 1 cut(s) 305
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 1 cut(s) 263
Sau96I GGNCC 1 cut(s) 527
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 1 cut(s) 349
SduI GDGCHC 2 cut(s) 300, 334
SetI ASST 7 cut(s) 11, 222, 285, 348, 400, 479, 500
SfaNI GCATC 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 47
SinI GGWCC 1 cut(s) 527
SphI GCATGC 1 cut(s) 94
Sse9I AATT 3 cut(s) 49, 72, 515
SsiI CCGC 1 cut(s) 530
SspMI CTAG 3 cut(s) 198, 260, 553
StyI CCWWGG 1 cut(s) 440
TaaI ACNGT 1 cut(s) 213
TaqI TCGA 1 cut(s) 47
TasI AATT 3 cut(s) 49, 72, 515
TatI WGTACW 2 cut(s) 64, 491
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 2 cut(s) 166, 487
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 221, 511
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 2 cut(s) 166, 487
Van91I CCANNNNNTGG 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 527
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 94
XspI CTAG 3 cut(s) 198, 260, 553
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.