MD07G1123600.v1.1
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0006997
Physical Location & Seq
Reverse (-)
17154498 .. 17163919
9422 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1123600.v1.1.491

Sequence Viewer

Length: 648 bp
ATGGTGAGAGGAAAAACTCAGATGAGGCGCATAGAGAACGCGACGAGCCGTCAGGTGACATTCTCAAAGAGGAGAAGTGGTCTGCTAAAGAAGGCCTTTGAGCTCTCAGTTCTTTGCGATGCTGAGGTTTCCCTCATCATCTTCTCTCCCAGAGGAAAACTCTTCGAATTTGCAAGTTCCAGCATGCAGGGAACCATAGAGCGATATCAGAAGCACGCGAAAGGCAATCAAACCGGCAACAAATCCAGTTCCAATGAACAAAATATGCAGCATCTGAAGCAAAAAGCAACTAGCATGATGAAACAGTTAGAGCTTCTTGAAGTATCAAAACGGAAACTCTTGGGAGAGGGTCTAGGATCATGCACTCTTGCAGAACTACAAGAAATAGAGCACCAGTTGGAGAAGAGCGTGAACAACGTCCGAGCCCGAAAGAGTCAGGTTTTCAAGGAACAGATTGAGCAACTGAGAGAAAAGGAGAAACTCCTCAAAGCTGAAACTGCACGACTGGTTGAGAAGTGTGGTAGTTTCCAGCCAAGGAAAACATTGGACGAGCGAAGACAAAACACAACCTACACTGATAGTAGTACAAGCTCAGATGTTGAGACTGAATTGTTCATTGGACTGCCAGAAAGTAGAGCGAGGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

216

Amino Acids

24.59

Weight (kDa)

9.83

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 7.9e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 85 - 173 1.8e-23 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 41, 218
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 1 cut(s) 586
AgsI TTSAA 2 cut(s) 320, 445
AhdI GACNNNNNGTC 1 cut(s) 48
AjuI GAANNNNNNNTTGG 2 cut(s) 600, 632
AluBI AGCT 4 cut(s) 103, 313, 491, 591
AluI AGCT 4 cut(s) 103, 313, 491, 591
Alw21I GWGCWC 2 cut(s) 105, 393
Alw26I GTCTC 1 cut(s) 596
AlwI GGATC 1 cut(s) 364
AlwNI CAGNNNCTG 1 cut(s) 274
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 2 cut(s) 30, 645
AsuHPI GGTGA 2 cut(s) 16, 67
AsuII TTCGAA 1 cut(s) 165
BanII GRGCYC 2 cut(s) 105, 427
BbsI GAAGAC 1 cut(s) 562
Bbv12I GWGCWC 2 cut(s) 105, 393
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 596
BfaI CTAG 3 cut(s) 291, 353, 646
BfoI RGCGCY 1 cut(s) 646
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
BmeRI GACNNNNNGTC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 193
BmsI GCATC 2 cut(s) 109, 280
BpiI GAAGAC 1 cut(s) 562
BplI GAGNNNNNCTC 2 cut(s) 144, 176
Bpu10I CCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 533
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 246, 394, 510
BseDI CCNNGG 1 cut(s) 533
BseMII CTCAG 5 cut(s) 32, 114, 120, 455, 606
BseNI ACTGG 3 cut(s) 246, 394, 510
BseRI GAGGAG 2 cut(s) 85, 473
BseXI GCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 483
Bsh1236I CGCG 2 cut(s) 41, 218
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 2 cut(s) 105, 393
BsiSI CCGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 596
BsnI GGCC 1 cut(s) 95
Bsp119I TTCGAA 1 cut(s) 165
Bsp1286I GDGCHC 3 cut(s) 105, 393, 427
Bsp143I GATC 1 cut(s) 356
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 5 cut(s) 31, 115, 119, 456, 605
BspFNI CGCG 2 cut(s) 41, 218
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 364
BspQI GCTCTTC 1 cut(s) 398
BspT104I TTCGAA 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 3 cut(s) 246, 394, 510
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 533
BssMI GATC 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 533
Bst4CI ACNGT 1 cut(s) 306
Bst6I CTCTTC 2 cut(s) 167, 398
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 185, 216
BstDEI CTNAG 5 cut(s) 18, 106, 123, 464, 592
BstFNI CGCG 2 cut(s) 41, 218
BstH2I RGCGCY 1 cut(s) 646
BstHHI GCGC 2 cut(s) 30, 645
BstKTI GATC 1 cut(s) 359
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 1 cut(s) 356
BstMWI GCNNNNNNNGC 2 cut(s) 277, 497
BstNSI RCATGY 1 cut(s) 187
BstUI CGCG 2 cut(s) 41, 218
BstV1I GCAGC 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 562
BsuRI GGCC 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 2 cut(s) 185, 216
CaiI CAGNNNCTG 1 cut(s) 274
CfoI GCGC 2 cut(s) 30, 645
Cfr10I RCCGGY 1 cut(s) 233
Csp6I GTAC 1 cut(s) 585
CviAII CATG 3 cut(s) 184, 295, 360
CviJI RGCY 8 cut(s) 48, 95, 103, 313, 425, 491, 532, 591
CviKI_1 RGCY 8 cut(s) 48, 95, 103, 313, 425, 491, 532, 591
CviQI GTAC 1 cut(s) 585
DdeI CTNAG 5 cut(s) 18, 106, 123, 464, 592
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
DriI GACNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 167, 398
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 2 cut(s) 167, 398
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 533
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 2 cut(s) 105, 427
Eco32I GATATC 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 103
EcoRV GATATC 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 533
EcoT38I GRGCYC 2 cut(s) 105, 427
ErhI CCWWGG 1 cut(s) 533
FaeI CATG 3 cut(s) 187, 298, 363
FaiI YATR 6 cut(s) 32, 185, 197, 266, 296, 361
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FatI CATG 3 cut(s) 183, 294, 359
Fnu4HI GCNGC 1 cut(s) 269
FriOI GRGCYC 2 cut(s) 105, 427
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 3 cut(s) 291, 353, 646
GlaI GCGC 2 cut(s) 29, 644
GluI GCNGC 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 646
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 234
HhaI GCGC 2 cut(s) 30, 645
Hin1II CATG 3 cut(s) 187, 298, 363
Hin6I GCGC 2 cut(s) 28, 643
HinP1I GCGC 2 cut(s) 28, 643
HinfI GANTC 1 cut(s) 433
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 16, 67
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 5 cut(s) 21, 210, 276, 422, 595
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 6 cut(s) 173, 187, 268, 363, 371, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 497
HpyF3I CTNAG 5 cut(s) 18, 106, 123, 464, 592
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 3 cut(s) 187, 298, 363
HspAI GCGC 2 cut(s) 28, 643
Kzo9I GATC 1 cut(s) 356
LguI GCTCTTC 1 cut(s) 398
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 2 cut(s) 109, 280
MaeI CTAG 3 cut(s) 291, 353, 646
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MboII GAAGA 4 cut(s) 133, 154, 415, 567
MhlI GDGCHC 3 cut(s) 105, 393, 427
MluCI AATT 2 cut(s) 167, 608
MlyI GAGTC 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 8 cut(s) 18, 63, 118, 143, 146, 340, 494, 633
MspI CCGG 1 cut(s) 234
MvnI CGCG 2 cut(s) 41, 218
MwoI GCNNNNNNNGC 2 cut(s) 277, 497
NdeII GATC 1 cut(s) 356
NlaIII CATG 3 cut(s) 187, 298, 363
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 187
NspV TTCGAA 1 cut(s) 165
PaeI GCATGC 1 cut(s) 187
PceI AGGCCT 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 398
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 1 cut(s) 441
PpsI GAGTC 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 274
RsaI GTAC 1 cut(s) 586
RsaNI GTAC 1 cut(s) 585
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 398
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 1 cut(s) 356
SchI GAGTC 1 cut(s) 442
SduI GDGCHC 3 cut(s) 105, 393, 427
SetI ASST 9 cut(s) 57, 105, 129, 315, 420, 441, 493, 572, 593
SfaNI GCATC 2 cut(s) 109, 280
SfuI TTCGAA 1 cut(s) 165
SphI GCATGC 1 cut(s) 187
Sse9I AATT 2 cut(s) 167, 608
SseBI AGGCCT 1 cut(s) 95
SspMI CTAG 3 cut(s) 291, 353, 646
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 95
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 1 cut(s) 420
TaqI TCGA 1 cut(s) 165
TasI AATT 2 cut(s) 167, 608
TatI WGTACW 1 cut(s) 584
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 270, 314, 604
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 1 cut(s) 580
XapI RAATTY 1 cut(s) 167
XceI RCATGY 1 cut(s) 187
XspI CTAG 3 cut(s) 291, 353, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.