RLG00000028389
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006997
Physical Location & Seq
Forward (+)
22124897 .. 22134232
9336 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028389

Sequence Viewer

Length: 621 bp
ATGCTAGCTTGGTGCCGTGACTCAAACACAACTCTCTACTCGGAATCCTCTCTACAACTTGCCAAATTTGAAAAGAAAAAAAAAATGGTGCGAGGCAAAACCCAGATGAGGCGGATAGAGAACGCCACGAGCCGTCAAGTCACCTTCTCGAAGCGACGAAGCGGTCTTCTGAAGAAGGCTTTCGAGCTCTCCATTCTCTGCGACGCTGAGGTTGCGCTCATAATCTTCTCTCCGAGAGGAAAGCTCTACGAATTCGCTAGCTCCAGCATGCAGACGACTATAGAACGTTATGAGAAGCATACAAAAGACAACCAAGCCAACAACAAATCTGTTGCCAGTGAACAAAATGTGCAGCAGCTCAAGCATGAAGCAACTAGCATGATGAAGCAGATAGAGCATCTTGAAGTTTCGAAACGGAAACTATTGGGAGAGAGTCTAGGACTATGCAGTATTGACGAACTGCAAGAAATAGAGCAACAGTTGGAGAGGAGTGTGAACAGCATTCGAGCAAGGAAGGCACAGGTTTTCAAAGAACAGATTGAGCAACTGAGAGAAAAGGTAAACTTCTACAGTAATGCTTTCATTTACGGACTGCAGGCCCCAATCTCTCTGTGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

207

Amino Acids

23.79

Weight (kDa)

9.49

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 38 - 85 5.9e-27 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 113 - 188 1e-21 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 162
AccB1I GGYRCC 1 cut(s) 12
AciI CCGC 2 cut(s) 112, 162
AclI AACGTT 1 cut(s) 286
AcsI RAATTY 2 cut(s) 65, 251
AcuI CTGAAG 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 3 cut(s) 71, 404, 529
AluBI AGCT 5 cut(s) 8, 187, 244, 261, 358
AluI AGCT 5 cut(s) 8, 187, 244, 261, 358
Alw21I GWGCWC 1 cut(s) 189
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 2 cut(s) 352, 355
ApoI RAATTY 2 cut(s) 65, 251
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 598
AsuHPI GGTGA 1 cut(s) 133
AsuII TTCGAA 1 cut(s) 410
AsuNHI GCTAGC 2 cut(s) 4, 257
BanI GGYRCC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 189
BauI CACGAG 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 364, 367
BceAI ACGGC 1 cut(s) 117
BfaI CTAG 4 cut(s) 5, 258, 375, 437
BfmI CTRYAG 3 cut(s) 279, 568, 593
BisI GCNGC 2 cut(s) 353, 356
BlsI GCNGC 2 cut(s) 354, 357
BmgT120I GGNCC 1 cut(s) 598
BmiI GGNNCC 2 cut(s) 14, 600
BmsI GCATC 1 cut(s) 406
BmtI GCTAGC 2 cut(s) 8, 261
BpiI GAAGAC 1 cut(s) 158
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 2 cut(s) 198, 539
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 502
BseXI GCAGC 2 cut(s) 364, 367
BsgI GTGCAG 1 cut(s) 371
BshFI GGCC 1 cut(s) 599
BshNI GGYRCC 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 108
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 1 cut(s) 599
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 189
BspACI CCGC 2 cut(s) 112, 162
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 2 cut(s) 199, 540
BspLI GGNNCC 2 cut(s) 14, 600
BspMAI CTGCAG 1 cut(s) 597
BspOI GCTAGC 2 cut(s) 8, 261
BspT104I TTCGAA 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 336
BssSI CACGAG 1 cut(s) 127
Bst2BI CACGAG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 480, 572
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 4 cut(s) 6, 259, 269, 597
BstDEI CTNAG 2 cut(s) 207, 548
BstHHI GCGC 1 cut(s) 217
BstMWI GCNNNNNNNGC 4 cut(s) 212, 361, 394, 515
BstNSI RCATGY 1 cut(s) 271
BstSFI CTRYAG 3 cut(s) 279, 568, 593
BstV1I GCAGC 2 cut(s) 364, 367
BstV2I GAAGAC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 599
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 4 cut(s) 6, 259, 269, 597
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 598
CseI GACGC 1 cut(s) 212
CviAII CATG 3 cut(s) 268, 365, 379
CviJI RGCY 9 cut(s) 8, 132, 179, 187, 244, 261, 317, 358, 599
CviKI_1 RGCY 9 cut(s) 8, 132, 179, 187, 244, 261, 317, 358, 599
DdeI CTNAG 2 cut(s) 207, 548
DrdI GACNNNNNNGTC 1 cut(s) 162
DseDI GACNNNNNNGTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 189
FaeI CATG 3 cut(s) 271, 368, 382
FaiI YATR 9 cut(s) 221, 269, 281, 291, 300, 366, 380, 445, 617
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FatI CATG 3 cut(s) 267, 364, 378
Fnu4HI GCNGC 2 cut(s) 353, 356
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 353, 356
FspBI CTAG 4 cut(s) 5, 258, 375, 437
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 353, 356
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 1 cut(s) 599
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 217
Hin1II CATG 3 cut(s) 271, 368, 382
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 3 cut(s) 20, 44, 433
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 3 cut(s) 341, 496, 562
Hpy188I TCNGA 3 cut(s) 43, 171, 234
Hpy188III TCNNGA 2 cut(s) 148, 401
Hpy8I GTNNAC 3 cut(s) 341, 496, 562
Hpy99I CGWCG 2 cut(s) 159, 206
HpyAV CCTTC 3 cut(s) 154, 169, 508
HpyCH4III ACNGT 2 cut(s) 480, 572
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 5 cut(s) 271, 352, 447, 463, 595
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 361, 394, 515
HpyF3I CTNAG 2 cut(s) 207, 548
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 3 cut(s) 271, 368, 382
HspAI GCGC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 5 cut(s) 116, 277, 349, 506, 581
Lsp1109I GCAGC 2 cut(s) 364, 367
LweI GCATC 1 cut(s) 406
MaeI CTAG 4 cut(s) 5, 258, 375, 437
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 2 cut(s) 17, 139
MboII GAAGA 3 cut(s) 158, 184, 217
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 2 cut(s) 65, 251
MlyI GAGTC 2 cut(s) 14, 442
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 6 cut(s) 58, 86, 102, 202, 230, 480
MroXI GAANNNNTTC 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 501
MwoI GCNNNNNNNGC 4 cut(s) 212, 361, 394, 515
NheI GCTAGC 2 cut(s) 4, 257
NlaIII CATG 3 cut(s) 271, 368, 382
NlaIV GGNNCC 2 cut(s) 14, 600
NmuCI GTSAC 2 cut(s) 17, 139
NspI RCATGY 1 cut(s) 271
NspV TTCGAA 1 cut(s) 410
PaeI GCATGC 1 cut(s) 271
PctI GAATGC 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 354, 357
PleI GAGTC 2 cut(s) 14, 441
PpsI GAGTC 2 cut(s) 14, 441
Psp124BI GAGCTC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 14, 600
PspPI GGNCC 1 cut(s) 598
PstI CTGCAG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 189
SatI GCNGC 2 cut(s) 353, 356
Sau96I GGNCC 1 cut(s) 598
SchI GAGTC 2 cut(s) 14, 442
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 3 cut(s) 279, 568, 593
SfuI TTCGAA 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SphI GCATGC 1 cut(s) 271
Sse9I AATT 2 cut(s) 65, 251
SsiI CCGC 2 cut(s) 112, 162
SspMI CTAG 4 cut(s) 5, 258, 375, 437
SstI GAGCTC 1 cut(s) 189
TaaI ACNGT 2 cut(s) 480, 572
TaiI ACGT 1 cut(s) 289
TaqI TCGA 4 cut(s) 149, 183, 410, 505
TasI AATT 2 cut(s) 65, 251
TfiI GAWTC 1 cut(s) 44
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 2 cut(s) 17, 139
TseI GCWGC 2 cut(s) 352, 355
Tsp45I GTSAC 2 cut(s) 17, 139
TspDTI ATGAA 3 cut(s) 381, 398, 571
TspGWI ACGGA 2 cut(s) 430, 603
TspRI CASTG 1 cut(s) 343
XapI RAATTY 2 cut(s) 65, 251
XceI RCATGY 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 4 cut(s) 5, 258, 375, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.