Rorug01G0220700
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006997
Physical Location & Seq
Forward (+)
31624029 .. 31624649
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0220700.1

Sequence Viewer

Length: 621 bp
ATGGCTGCTGATATGGGTGGTTCCTATGGATTGACCCTCCGATACAAGAGCATCGAACGAATGAAGCCTATTGGAAAGCATTCTCTTCTCGGCGCAAGTGGAGAAATCAGTGATTTCCAGGAGCTGCTACGTTATCTTGACGAGCTCACCCAACAGGACAGCATGTGTGATGATGGAAACTCTTTGGGACCTAAAGAGATCCACAGCTATTTGACCCGTGTGATGTACAACAGGCGTAACGAGTTTGATCCGCTGTGGAACTCGCTTGTGCTTGGTGGAGTGAAGAAGGGTAAGACATACCTCGGAATGGTTACTATGATAGGTGTGAACTTTGAGGACAATCATGTTGCTACTGGATTTGGAAACCACCTTGCAAGGCCTATTCTTCGTGATGAATGGCGCAAGGACTTGAGTTTCGAAGAAGGTGTTAGGCTTCTTGAGAAATGCATGCGTGTCCTTTTGTATCGTGATAGGTCTGCTGTTAACAAGCTTCAGATAGCTAACATCACTAAAGAAGGTGTAACAATCTCTCAGCCCTACTCCTTGAAGACTTCCTGGAATTTCTCTGCTTTCCAAAATCCAACAGCAGGTGCTCAAGGATCATGGTACGTAACTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

206

Amino Acids

23.25

Weight (kDa)

8.46

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 1 - 167 2.5e-24 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 578
Acc36I ACCTGC 1 cut(s) 578
AciI CCGC 1 cut(s) 251
AclWI GGATC 3 cut(s) 193, 242, 607
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 476
AfaI GTAC 2 cut(s) 227, 608
AfiI CCNNNNNNNGG 2 cut(s) 307, 587
AgsI TTSAA 1 cut(s) 547
AjnI CCWGG 2 cut(s) 117, 554
AluBI AGCT 5 cut(s) 124, 145, 207, 490, 500
AluI AGCT 5 cut(s) 124, 145, 207, 490, 500
Alw21I GWGCWC 2 cut(s) 147, 595
AlwI GGATC 3 cut(s) 193, 242, 607
AlwNI CAGNNNCTG 1 cut(s) 124
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 2 cut(s) 5, 124
ApoI RAATTY 1 cut(s) 559
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
Asp700I GAANNNNTTC 1 cut(s) 79
AspLEI GCGC 2 cut(s) 95, 402
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 139
AsuII TTCGAA 1 cut(s) 417
AvaII GGWCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 2 cut(s) 147, 595
BbvI GCAGC 1 cut(s) 111
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 2 cut(s) 119, 556
BfuAI ACCTGC 1 cut(s) 578
BisI GCNGC 2 cut(s) 6, 125
BlsI GCNGC 2 cut(s) 7, 126
Bme1390I CCNGG 2 cut(s) 119, 556
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 22, 189
BmrFI CCNGG 2 cut(s) 119, 556
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 554
Bpu14I TTCGAA 1 cut(s) 417
BpuEI CTTGAG 3 cut(s) 430, 458, 579
BsaAI YACGTR 1 cut(s) 610
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 587
Bse1I ACTGG 2 cut(s) 358, 619
BseBI CCWGG 2 cut(s) 119, 556
BseDI CCNNGG 1 cut(s) 301
BseLI CCNNNNNNNGG 2 cut(s) 307, 587
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 2 cut(s) 358, 619
BseXI GCAGC 1 cut(s) 111
BshFI GGCC 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 147, 595
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 307, 587
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 1 cut(s) 379
Bsp119I TTCGAA 1 cut(s) 417
Bsp1286I GDGCHC 2 cut(s) 147, 595
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 3 cut(s) 198, 247, 599
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 22, 189
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 3 cut(s) 193, 242, 607
BspT104I TTCGAA 1 cut(s) 417
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 2 cut(s) 358, 619
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 3 cut(s) 198, 247, 599
Bst2UI CCWGG 2 cut(s) 119, 556
Bst6I CTCTTC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 610
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 1 cut(s) 531
BstHHI GCGC 2 cut(s) 95, 402
BstKTI GATC 3 cut(s) 201, 250, 602
BstMBI GATC 3 cut(s) 198, 247, 599
BstNI CCWGG 2 cut(s) 119, 556
BstNSI RCATGY 2 cut(s) 166, 451
BstSCI CCNGG 2 cut(s) 117, 554
BstSNI TACGTA 1 cut(s) 610
BstV1I GCAGC 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 115
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 1 cut(s) 449
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 2 cut(s) 95, 402
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 226, 607
CviAII CATG 4 cut(s) 163, 344, 448, 603
CviQI GTAC 2 cut(s) 226, 607
DdeI CTNAG 1 cut(s) 531
DpnI GATC 3 cut(s) 200, 249, 601
DpnII GATC 3 cut(s) 198, 247, 599
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 145
Eco105I TACGTA 1 cut(s) 610
Eco147I AGGCCT 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 117, 554
EcoT22I ATGCAT 1 cut(s) 449
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 4 cut(s) 166, 347, 451, 606
FaiI YATR 8 cut(s) 14, 27, 164, 298, 317, 345, 449, 604
FaqI GGGAC 1 cut(s) 201
FatI CATG 4 cut(s) 162, 343, 447, 602
Fnu4HI GCNGC 2 cut(s) 6, 125
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 6, 125
GlaI GCGC 2 cut(s) 94, 401
GluI GCNGC 2 cut(s) 6, 125
HaeIII GGCC 1 cut(s) 379
HhaI GCGC 2 cut(s) 95, 402
Hin1II CATG 4 cut(s) 166, 347, 451, 606
Hin6I GCGC 2 cut(s) 93, 400
HinP1I GCGC 2 cut(s) 93, 400
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 488
HpaI GTTAAC 1 cut(s) 484
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 328, 484
Hpy188I TCNGA 3 cut(s) 41, 305, 495
Hpy188III TCNNGA 4 cut(s) 137, 389, 437, 467
Hpy8I GTNNAC 2 cut(s) 328, 484
HpyAV CCTTC 3 cut(s) 280, 416, 509
HpyCH4IV ACGT 2 cut(s) 130, 609
HpyCH4V TGCA 2 cut(s) 374, 447
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 2 cut(s) 130, 609
Hsp92II CATG 4 cut(s) 166, 347, 451, 606
HspAI GCGC 2 cut(s) 93, 400
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 3 cut(s) 198, 247, 599
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 9 cut(s) 104, 131, 140, 217, 339, 541, 568, 573, 600
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 60
MaeII ACGT 2 cut(s) 130, 609
MaeIII GTNAC 4 cut(s) 236, 310, 520, 610
MalI GATC 3 cut(s) 200, 249, 601
MboI GATC 3 cut(s) 198, 247, 599
MboII GAAGA 5 cut(s) 77, 295, 377, 431, 559
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 147, 595
MluCI AATT 1 cut(s) 559
MmeI TCCRAC 1 cut(s) 605
MnlI CCTC 3 cut(s) 47, 311, 328
Mph1103I ATGCAT 1 cut(s) 449
MroXI GAANNNNTTC 1 cut(s) 79
MseI TTAA 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 253
MspR9I CCNGG 2 cut(s) 119, 556
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 2 cut(s) 119, 556
NdeII GATC 3 cut(s) 198, 247, 599
NlaIII CATG 4 cut(s) 166, 347, 451, 606
NlaIV GGNNCC 2 cut(s) 22, 189
NmeAIII GCCGAG 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 449
NspI RCATGY 2 cut(s) 166, 451
NspV TTCGAA 1 cut(s) 417
PaeI GCATGC 1 cut(s) 451
PaqCI CACCTGC 1 cut(s) 578
PceI AGGCCT 1 cut(s) 379
PctI GAATGC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 79
PfoI TCCNGGA 2 cut(s) 117, 554
PkrI GCNGC 2 cut(s) 7, 126
Ppu21I YACGTR 1 cut(s) 610
PpuMI RGGWCCY 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 117, 554
PspGI CCWGG 2 cut(s) 117, 554
PspN4I GGNNCC 2 cut(s) 22, 189
PspPI GGNCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 198
RsaI GTAC 2 cut(s) 227, 608
RsaNI GTAC 2 cut(s) 226, 607
SacI GAGCTC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 2 cut(s) 6, 125
Sau3AI GATC 3 cut(s) 198, 247, 599
Sau96I GGNCC 1 cut(s) 188
ScrFI CCNGG 2 cut(s) 119, 556
SduI GDGCHC 2 cut(s) 147, 595
SfaNI GCATC 1 cut(s) 60
SfuI TTCGAA 1 cut(s) 417
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 3 cut(s) 409, 437, 594
SmoI CTYRAG 3 cut(s) 409, 437, 594
SnaBI TACGTA 1 cut(s) 610
SphI GCATGC 1 cut(s) 451
Sse9I AATT 1 cut(s) 559
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 1 cut(s) 251
SstI GAGCTC 1 cut(s) 147
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 2 cut(s) 117, 554
TaiI ACGT 2 cut(s) 133, 612
TaqI TCGA 2 cut(s) 54, 417
TasI AATT 1 cut(s) 559
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 115
TseI GCWGC 2 cut(s) 5, 124
TspDTI ATGAA 2 cut(s) 77, 408
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 1 cut(s) 559
XceI RCATGY 2 cut(s) 166, 451
XmnI GAANNNNTTC 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.