Prupe.2G151200_v2.0.a1
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0006997
Physical Location & Seq
Reverse (-)
20600270 .. 20606939
6670 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G151200.1

Sequence Viewer

Length: 648 bp
ATGGTGAGAGGAAAAACCCAGATGAGGCGCATAGAGAACGCCACCAGCCGCCAAGTCACCTTCTCAAAGAGGAGAAGTGGTCTTCTAAAGAAGGCCTTTGAGCTTTCAGTTCTCTGTGATGCTGAGGTTGCGCTCATAATATTCTCTCCAAGGGGAAAGCTCTATGAATTTGCAAGTTCGAGCATGCAGACAACCATAGAACGTTATCAGAAGCATACAAAAGACAACCATACCAGCAACAAATCCGTTTCCACTGACCAAAATATGCAGCACCTGAAGCAAGAATCATCTAGCATGATGAAGCAGATAGAGCTTCTTGAAGTATCAAAACGGAAGCTCTTGGGAGAGGGTCTAGGATCATGCACTATTGAAGAGCTACAAGAAATTGAGCAACAGTTGGAGAGGAGCGTGAGCAACGTTCGAGCAAGAAAGACTCAAGTTTTCAAGGAACAGATTGACCAACTGAGAGAAAAGGGGAAAGCCCTAGCAGCTGAAAATGAAAGACTAATTGAGAAGTGTGGTAAAATCCAACCAAGGAAAGCATCAAATGAGCAAAGAGAAAACTTAGCCTACACTGAAAGTAGTCCAAGTTCTGATGTTGAGACTGAATTGTTCATTGGACTGCCAGAAAGAAGAATGAAGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

216

Amino Acids

24.73

Weight (kDa)

9.51

Isoelectric Point (pI)

63.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 49
AclI AACGTT 2 cut(s) 202, 417
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 296
AfeI AGCGCT 1 cut(s) 644
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 3 cut(s) 320, 371, 445
AjuI GAANNNNNNNTTGG 2 cut(s) 600, 632
AluBI AGCT 6 cut(s) 103, 160, 313, 337, 376, 491
AluI AGCT 6 cut(s) 103, 160, 313, 337, 376, 491
Alw26I GTCTC 1 cut(s) 596
AlwI GGATC 1 cut(s) 364
AlwNI CAGNNNCTG 1 cut(s) 274
Aor51HI AGCGCT 1 cut(s) 644
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 268, 488
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 3 cut(s) 30, 133, 645
AsuHPI GGTGA 2 cut(s) 16, 49
BbsI GAAGAC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 280, 500
BcoDI GTCTC 1 cut(s) 596
BfaI CTAG 4 cut(s) 291, 353, 485, 646
BfoI RGCGCY 1 cut(s) 646
BisI GCNGC 3 cut(s) 49, 269, 489
BlsI GCNGC 3 cut(s) 50, 270, 490
BmsI GCATC 2 cut(s) 109, 551
BpiI GAAGAC 1 cut(s) 74
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 149, 533
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 149, 533
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 114, 455
BseRI GAGGAG 2 cut(s) 85, 418
BseXI GCAGC 2 cut(s) 280, 500
BshFI GGCC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 596
BsnI GGCC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 356
BspACI CCGC 1 cut(s) 49
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 115, 456
BspPI GGATC 1 cut(s) 364
BspQI GCTCTTC 1 cut(s) 366
BssECI CCNNGG 2 cut(s) 149, 533
BssMI GATC 1 cut(s) 356
BssT1I CCWWGG 2 cut(s) 149, 533
Bst4CI ACNGT 1 cut(s) 396
Bst6I CTCTTC 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 3 cut(s) 123, 464, 565
BstH2I RGCGCY 1 cut(s) 646
BstHHI GCGC 3 cut(s) 30, 133, 645
BstKTI GATC 1 cut(s) 359
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 1 cut(s) 356
BstMWI GCNNNNNNNGC 4 cut(s) 128, 277, 310, 488
BstNSI RCATGY 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 280, 500
BstV2I GAAGAC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 95
BtsIMutI CAGTG 2 cut(s) 252, 573
Cac8I GCNNGC 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 274
CfoI GCGC 3 cut(s) 30, 133, 645
CviAII CATG 3 cut(s) 184, 295, 360
DdeI CTNAG 3 cut(s) 123, 464, 565
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 2 cut(s) 149, 533
Eco147I AGGCCT 1 cut(s) 95
Eco47III AGCGCT 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 296
EcoT14I CCWWGG 2 cut(s) 149, 533
ErhI CCWWGG 2 cut(s) 149, 533
FaeI CATG 3 cut(s) 187, 298, 363
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FatI CATG 3 cut(s) 183, 294, 359
Fnu4HI GCNGC 3 cut(s) 49, 269, 489
Fsp4HI GCNGC 3 cut(s) 49, 269, 489
FspBI CTAG 4 cut(s) 291, 353, 485, 646
GlaI GCGC 3 cut(s) 29, 132, 644
GluI GCNGC 3 cut(s) 49, 269, 489
HaeII RGCGCY 1 cut(s) 646
HaeIII GGCC 1 cut(s) 95
HhaI GCGC 3 cut(s) 30, 133, 645
Hin1II CATG 3 cut(s) 187, 298, 363
Hin6I GCGC 3 cut(s) 28, 131, 643
HinP1I GCGC 3 cut(s) 28, 131, 643
HinfI GANTC 2 cut(s) 284, 433
HphI GGTGA 2 cut(s) 16, 49
Hpy188I TCNGA 2 cut(s) 210, 595
Hpy188III TCNNGA 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 70, 85
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4IV ACGT 2 cut(s) 202, 417
HpyCH4V TGCA 4 cut(s) 173, 187, 268, 363
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 277, 310, 488
HpyF3I CTNAG 3 cut(s) 123, 464, 565
HpySE526I ACGT 2 cut(s) 202, 417
Hsp92II CATG 3 cut(s) 187, 298, 363
HspAI GCGC 3 cut(s) 28, 131, 643
Kzo9I GATC 1 cut(s) 356
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 405
LpnPI CCDG 5 cut(s) 32, 58, 247, 287, 639
Lsp1109I GCAGC 2 cut(s) 280, 500
LweI GCATC 2 cut(s) 109, 551
MaeI CTAG 4 cut(s) 291, 353, 485, 646
MaeII ACGT 2 cut(s) 202, 417
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MboII GAAGA 3 cut(s) 74, 383, 645
MluCI AATT 4 cut(s) 167, 384, 507, 608
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 2 cut(s) 378, 553
MnlI CCTC 5 cut(s) 18, 63, 118, 340, 396
MspA1I CMGCKG 1 cut(s) 491
MwoI GCNNNNNNNGC 4 cut(s) 128, 277, 310, 488
NdeII GATC 1 cut(s) 356
NlaIII CATG 3 cut(s) 187, 298, 363
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 187
PaeI GCATGC 1 cut(s) 187
PceI AGGCCT 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 3 cut(s) 50, 270, 490
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Psp1406I AACGTT 2 cut(s) 202, 417
PsrI GAACNNNNNNTAC 2 cut(s) 574, 606
PstNI CAGNNNCTG 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 491
SapI GCTCTTC 1 cut(s) 366
SatI GCNGC 3 cut(s) 49, 269, 489
Sau3AI GATC 1 cut(s) 356
SchI GAGTC 1 cut(s) 427
SfaNI GCATC 2 cut(s) 109, 551
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
SphI GCATGC 1 cut(s) 187
Sse9I AATT 4 cut(s) 167, 384, 507, 608
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 1 cut(s) 49
SspI AATATT 1 cut(s) 141
SspMI CTAG 4 cut(s) 291, 353, 485, 646
StuI AGGCCT 1 cut(s) 95
StyI CCWWGG 2 cut(s) 149, 533
TaaI ACNGT 1 cut(s) 396
TaiI ACGT 2 cut(s) 205, 420
TaqI TCGA 2 cut(s) 179, 421
TasI AATT 4 cut(s) 167, 384, 507, 608
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 1 cut(s) 284
TscAI CASTG 2 cut(s) 259, 580
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 268, 488
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 180, 314, 513, 604
TspGWI ACGGA 2 cut(s) 235, 346
TspRI CASTG 2 cut(s) 259, 580
XapI RAATTY 1 cut(s) 167
XceI RCATGY 1 cut(s) 187
XspI CTAG 4 cut(s) 291, 353, 485, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.