Rh1BG205300
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0006997
Physical Location & Seq
Reverse (-)
32389752 .. 32393811
4060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG205300.1

Sequence Viewer

Length: 513 bp
ATGATTAATAGCAACGTTGATTTAAAGAAGATACATTCGTTCCTCATCCAACATACAACTATAGAACGTTATGAGAAGCATACAAAAGACAACCAAGCCAACAACAAATCTGTTGCCAGTGAACAAAATGTGCAGCAGCTCAAGCATGAAGCAACTAGCATGATGAAGCAGATAGAGCATCTTGAAGTTTCGAAACGGAAACTATTGGGAGAGAGTCTAGGACTATGCAGCATTGACGAACTGCAAGAAATAGAGCAACAGTTGGAGAGGAGTGTGAACAGCATTCGAGCAAGGAAGGCACAGGTTTACAAGGAACAGATTGAGCAATTGAGAGAAAAGGAAAGAGTCCTCACAGCTGAAAATCAGAGGCTAAATGAGAAGTGTGAGACCATGCAACCGAGGCAACCAGTAAGTGAGCAGAGAGAAAACTTAGCCTGCACTGAAAGTAGTCCAAGTTCAGATGTTGAGACTGAATTGTTCATTGGACTGCCAGAAAGAAGATCGAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

170

Amino Acids

19.81

Weight (kDa)

6.33

Isoelectric Point (pI)

63.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 40 - 128 2.2e-25 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 15, 67
AgsI TTSAA 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 2 cut(s) 139, 356
AluI AGCT 2 cut(s) 139, 356
Alw26I GTCTC 2 cut(s) 380, 461
ApeKI GCWGC 3 cut(s) 133, 136, 228
AseI ATTAAT 1 cut(s) 6
AsuII TTCGAA 1 cut(s) 191
BaeI ACNNNNGTAYC 2 cut(s) 23, 56
BbvI GCAGC 3 cut(s) 145, 148, 240
BcoDI GTCTC 2 cut(s) 380, 461
BfaI CTAG 3 cut(s) 156, 218, 511
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 3 cut(s) 134, 137, 229
BlsI GCNGC 3 cut(s) 135, 138, 230
BmsI GCATC 1 cut(s) 187
Bpu14I TTCGAA 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 398
Bse1I ACTGG 2 cut(s) 117, 407
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 1 cut(s) 45
BseNI ACTGG 2 cut(s) 117, 407
BseRI GAGGAG 1 cut(s) 283
BseXI GCAGC 3 cut(s) 145, 148, 240
BsgI GTGCAG 2 cut(s) 152, 421
BsmAI GTCTC 2 cut(s) 380, 461
BsmI GAATGC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 191
Bsp143I GATC 1 cut(s) 500
BspT104I TTCGAA 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 380
BsrI ACTGG 2 cut(s) 117, 407
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 1 cut(s) 500
Bst4CI ACNGT 1 cut(s) 261
BstBI TTCGAA 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 1 cut(s) 430
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 1 cut(s) 503
BstMAI GTCTC 2 cut(s) 380, 461
BstMBI GATC 1 cut(s) 500
BstMWI GCNNNNNNNGC 4 cut(s) 142, 175, 296, 400
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 145, 148, 240
BtsCI GGATG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 124, 438
Cac8I GCNNGC 1 cut(s) 436
CviAII CATG 3 cut(s) 146, 160, 391
CviJI RGCY 5 cut(s) 98, 139, 356, 370, 434
CviKI_1 RGCY 5 cut(s) 98, 139, 356, 370, 434
DdeI CTNAG 1 cut(s) 430
DpnI GATC 1 cut(s) 502
DpnII GATC 1 cut(s) 500
DraI TTTAAA 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 380
FaeI CATG 3 cut(s) 149, 163, 394
FaiI YATR 8 cut(s) 54, 62, 72, 81, 147, 161, 226, 392
FatI CATG 3 cut(s) 145, 159, 390
Fnu4HI GCNGC 3 cut(s) 134, 137, 229
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 3 cut(s) 134, 137, 229
FspBI CTAG 3 cut(s) 156, 218, 511
GluI GCNGC 3 cut(s) 134, 137, 229
Hin1II CATG 3 cut(s) 149, 163, 394
HinfI GANTC 2 cut(s) 214, 345
Hpy166II GTNNAC 3 cut(s) 122, 277, 307
Hpy188I TCNGA 2 cut(s) 366, 460
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 3 cut(s) 122, 277, 307
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 2 cut(s) 15, 67
HpyCH4V TGCA 5 cut(s) 133, 228, 244, 394, 438
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 175, 296, 400
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 2 cut(s) 15, 67
Hsp92II CATG 3 cut(s) 149, 163, 394
Kzo9I GATC 1 cut(s) 500
LpnPI CCDG 5 cut(s) 130, 287, 420, 448, 504
Lsp1109I GCAGC 3 cut(s) 145, 148, 240
LweI GCATC 1 cut(s) 187
MaeI CTAG 3 cut(s) 156, 218, 511
MaeII ACGT 2 cut(s) 15, 67
MalI GATC 1 cut(s) 502
MboI GATC 1 cut(s) 500
MboII GAAGA 2 cut(s) 40, 510
MfeI CAATTG 1 cut(s) 326
MluCI AATT 2 cut(s) 326, 473
MlyI GAGTC 2 cut(s) 223, 354
MmeI TCCRAC 2 cut(s) 73, 243
MnlI CCTC 5 cut(s) 53, 261, 359, 360, 393
MseI TTAA 2 cut(s) 6, 23
MspA1I CMGCKG 1 cut(s) 356
MunI CAATTG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 282
MwoI GCNNNNNNNGC 4 cut(s) 142, 175, 296, 400
NdeII GATC 1 cut(s) 500
NlaIII CATG 3 cut(s) 149, 163, 394
NspV TTCGAA 1 cut(s) 191
PctI GAATGC 1 cut(s) 282
PkrI GCNGC 3 cut(s) 135, 138, 230
PleI GAGTC 2 cut(s) 222, 353
PpsI GAGTC 2 cut(s) 222, 353
PshBI ATTAAT 1 cut(s) 6
Psp1406I AACGTT 2 cut(s) 15, 67
PsrI GAACNNNNNNTAC 2 cut(s) 439, 471
PvuII CAGCTG 1 cut(s) 356
SaqAI TTAA 2 cut(s) 6, 23
SatI GCNGC 3 cut(s) 134, 137, 229
Sau3AI GATC 1 cut(s) 500
SchI GAGTC 2 cut(s) 223, 354
SetI ASST 5 cut(s) 18, 70, 141, 306, 358
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 60
SfuI TTCGAA 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 2 cut(s) 326, 473
SspMI CTAG 3 cut(s) 156, 218, 511
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 2 cut(s) 18, 70
TaqI TCGA 3 cut(s) 191, 286, 503
TasI AATT 2 cut(s) 326, 473
Tru1I TTAA 2 cut(s) 6, 23
Tru9I TTAA 2 cut(s) 6, 23
TscAI CASTG 2 cut(s) 124, 445
TseI GCWGC 3 cut(s) 133, 136, 228
TspDTI ATGAA 3 cut(s) 162, 179, 469
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 2 cut(s) 124, 445
VspI ATTAAT 1 cut(s) 6
XspI CTAG 3 cut(s) 156, 218, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.