Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005836

Physical Location & Seq

Genomic Coordinates Forward (+)

18875736 .. 18877679

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGTATCAGTCAATGAACCTATCTTTTTCTTCTAACTTTACCAACCTATCCTTTCTCAAACCACGATTATACTCCGGAATCTCCGCCAGAGCTCCCAAATCCCTACATTTCAAATTCAATCCTTCCTGCGTCTCCTCCGGCCCCAAATCCGACGATTCACCTCTATCCGAGAAGCTCATTTCGCTGCTTAAAGCTGTCCCAAACTGGTCTGACGGTATCAAAGAGAGACGGATGCAGCAGAAACGATCTCTCTACACTCACGAGAATTGGGTCAGACACAGAAGCTCTCTTCGCCATCTCCGTCACGTATCCTCGAGCCCATCTTCACGCGTTATACTGTCTTTGATTCCGCCTGTTTTCTTCTTCACCACCGTCGCGATCCTGATCGCCGGCTATAACTCCGCCGTGGATTTGGACTGGTTGCCTGATTTCTTCCCTGTACTTCGAGCTTCTCCTCTACCGTATCAGCTTACGGCTCCGGCTTTAGCTCTGCTTCTAGTGTTTCGCACTGAGGCTTCTTATTCAAGGTTTGAACAAGGAAGGAAAGCTTGGGTTAAGATCATTAGTGGAACCAATGATTTAGCTAGGCTAGTTATTTCTTCTGTTCATGGCTCCGGTGATGAATTGATCATCAGAGATGCGCTTTTGCGTTACATTGTTGCTTTCCCTGTGGCGCTTAAGTGCCATGTGATTTATGGTTCAGATATTGCTAGTGATCTCAAGAATGTGATAGAAGTAGATGATCTGTCTTTGATTCTTCAATCCAAGCATCGTCCACGTTGTGTCATTCAATTCATTTCTCAGAGCCTTCAGCTGCTGAATTTGGATAGTACAAAGATAGATATGTTGGAAACAAAGATGATGCAATTACAGGAAGGAATTGGTGTATGTGAACAACTAATGGGAATTCCGATTCCACTTTCCTACACACGACTAACGTCGAGGTTCTTAGTCTTATGGCATCTAACACTCCCTGTTATTCTCTGGGATGATTGCCACTGGAATGTAGTCCCTGCTACTTTCATCAGTGCTGCCTCTCTCTTCTGCATTGAAGAAGTGGGTGTTCTTATAGAGGAGCCATTTTCAATGCTAGCTTTAGATGAGCTATGTGCTATGGTGCTTAGTAACAGTGATGAAGCTGTTGAATCCAAAGAGGTCATACGCAATCGAATCATCGCAAAGAAAAGGATCCTTGAAATTAAGCACTCATCAAATGGTTGGCATAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006996 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010109 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0015979 GO:0016020 GO:0016043 GO:0019222 GO:0019684 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031323 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042548 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0065007 GO:0071840 GO:0098656 GO:0098660 GO:0098661 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bestrophin

Protein Analysis

410

Amino Acids

46.28

Weight (kDa)

8.87

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bestrophin_2	PF25539	89 - 377	5.2e-83	Bacterial/Fungal Bestrophin protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45870 AT2G45870 AT2G45870 AT3G61320 AT3G61320 AT3G61320 AT3G61320
fragaria_vesca	FvH4_7g14170
malus_domestica	MD01G1057600.v1.1 MD01G1202300.v1.1 MD07G1139000.v1.1
prunus_persica	Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1
pyrus_communis	pycom01g08760 pycom07g13600
rosa_chinensis	RchiOBHm_Chr1g0355071
rosa_laevigata	RLG00000028179
rosa_multiflora	Rmu_sc0003115.1_g000030
rosa_roxburghii	Rroxscaffold_4G00300690
rosa_rugosa	Rorug01G0244900
rosa_samantha	Rh1AG257200 Rh1BG226500 Rh1CG240800 Rh1DG254100 Rh4DG156900
rosa_wichuraiana	Rw0G011210 Rw1G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	330, 377
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	3 cut(s)	84, 350, 402
AclWI	GGATC	3 cut(s)	373, 1183, 1196
AcsI	RAATTY	3 cut(s)	113, 820, 906
AcuI	CTGAAG	1 cut(s)	794
AdeI	CACNNNGTG	1 cut(s)	782
AfaI	GTAC	2 cut(s)	441, 832
AflII	CTTAAG	1 cut(s)	677
AflIII	ACRYGT	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	2 cut(s)	136, 220
AlwI	GGATC	3 cut(s)	373, 1183, 1196
AlwNI	CAGNNNCTG	1 cut(s)	817
Ama87I	CYCGRG	1 cut(s)	313
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	4 cut(s)	184, 235, 814, 1031
ApoI	RAATTY	3 cut(s)	113, 820, 906
AspLEI	GCGC	2 cut(s)	643, 676
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	3 cut(s)	150, 358, 629
AsuNHI	GCTAGC	1 cut(s)	1090
AvaI	CYCGRG	1 cut(s)	313
BamHI	GGATCC	1 cut(s)	1188
BanII	GRGCYC	2 cut(s)	94, 320
BauI	CACGAG	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	4 cut(s)	171, 247, 801, 1018
BccI	CCATC	2 cut(s)	303, 328
BceAI	ACGGC	2 cut(s)	389, 489
BciVI	GTATCC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	627
BcoDI	GTCTC	2 cut(s)	136, 220
BfaI	CTAG	5 cut(s)	497, 585, 590, 711, 1091
BfoI	RGCGCY	1 cut(s)	677
BfrI	CTTAAG	1 cut(s)	677
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	4 cut(s)	185, 236, 815, 1032
BlsI	GCNGC	4 cut(s)	186, 237, 816, 1033
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	6 cut(s)	142, 477, 571, 613, 1077, 1190
BmsI	GCATC	5 cut(s)	222, 628, 778, 852, 970
BmtI	GCTAGC	1 cut(s)	1094
BoxI	GACNNNNGTC	1 cut(s)	937
BpuEI	CTTGAG	1 cut(s)	704
BsaAI	YACGTR	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	405
BsaWI	WCCGGW	2 cut(s)	74, 614
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	3 cut(s)	209, 422, 1004
Bse8I	GATNNNNATC	1 cut(s)	383
BseAI	TCCGGA	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	2 cut(s)	237, 994
BseJI	GATNNNNATC	1 cut(s)	383
BseMII	CTCAG	2 cut(s)	501, 815
BseNI	ACTGG	3 cut(s)	209, 422, 1004
BseRI	GAGGAG	3 cut(s)	124, 444, 1088
BseXI	GCAGC	4 cut(s)	171, 247, 801, 1018
Bsh1236I	CGCG	2 cut(s)	330, 377
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	5 cut(s)	75, 138, 390, 479, 615
BslFI	GGGAC	2 cut(s)	182, 995
BsmAI	GTCTC	2 cut(s)	136, 220
BsmBI	CGTCTC	2 cut(s)	136, 220
BsmFI	GGGAC	2 cut(s)	182, 995
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	313
Bsp1286I	GDGCHC	2 cut(s)	94, 320
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	8 cut(s)	245, 378, 384, 558, 627, 715, 742, 1188
Bsp68I	TCGCGA	1 cut(s)	377
BspACI	CCGC	3 cut(s)	84, 350, 402
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	2 cut(s)	502, 814
BspEI	TCCGGA	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	330, 377
BspLI	GGNNCC	6 cut(s)	142, 477, 571, 613, 1077, 1190
BspOI	GCTAGC	1 cut(s)	1094
BspPI	GGATC	3 cut(s)	373, 1183, 1196
BspTI	CTTAAG	1 cut(s)	677
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	3 cut(s)	209, 422, 1004
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	8 cut(s)	245, 378, 384, 558, 627, 715, 742, 1188
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst4CI	ACNGT	5 cut(s)	215, 339, 373, 462, 1130
Bst6I	CTCTTC	2 cut(s)	294, 1046
BstAFI	CTTAAG	1 cut(s)	677
BstBAI	YACGTR	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	391, 1092
BstDEI	CTNAG	4 cut(s)	510, 801, 949, 1121
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	2 cut(s)	237, 994
BstFNI	CGCG	2 cut(s)	330, 377
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	2 cut(s)	643, 676
BstKTI	GATC	8 cut(s)	248, 381, 387, 561, 630, 718, 745, 1191
BstMAI	GTCTC	2 cut(s)	136, 220
BstMBI	GATC	8 cut(s)	245, 378, 384, 558, 627, 715, 742, 1188
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 291
BstPAI	GACNNNNGTC	1 cut(s)	937
BstUI	CGCG	2 cut(s)	330, 377
BstV1I	GCAGC	4 cut(s)	171, 247, 801, 1018
BstX2I	RGATCY	1 cut(s)	1188
BstYI	RGATCY	1 cut(s)	1188
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	405
BtgZI	GCGATG	1 cut(s)	1159
BtsCI	GGATG	2 cut(s)	237, 994
BtsIMutI	CAGTG	4 cut(s)	507, 997, 1033, 1135
BtuMI	TCGCGA	1 cut(s)	377
Cac8I	GCNNGC	2 cut(s)	391, 1092
CaiI	CAGNNNCTG	1 cut(s)	817
CfoI	GCGC	2 cut(s)	643, 676
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	440, 831
CviAII	CATG	2 cut(s)	608, 686
CviQI	GTAC	2 cut(s)	440, 831
DdeI	CTNAG	4 cut(s)	510, 801, 949, 1121
DpnI	GATC	8 cut(s)	247, 380, 386, 560, 629, 717, 744, 1190
DpnII	GATC	8 cut(s)	245, 378, 384, 558, 627, 715, 742, 1188
DraIII	CACNNNGTG	1 cut(s)	782
Eam1104I	CTCTTC	2 cut(s)	294, 1046
EarI	CTCTTC	2 cut(s)	294, 1046
EciI	GGCGGA	3 cut(s)	73, 339, 391
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	2 cut(s)	94, 320
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	794
Eco88I	CYCGRG	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	906
EcoT38I	GRGCYC	2 cut(s)	94, 320
Esp3I	CGTCTC	2 cut(s)	136, 220
FaeI	CATG	2 cut(s)	611, 689
FalI	AAGNNNNNCTT	2 cut(s)	532, 564
FaqI	GGGAC	2 cut(s)	182, 995
FatI	CATG	2 cut(s)	607, 685
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	4 cut(s)	185, 236, 815, 1032
FokI	GGATG	2 cut(s)	244, 1001
FriOI	GRGCYC	2 cut(s)	94, 320
Fsp4HI	GCNGC	4 cut(s)	185, 236, 815, 1032
FspBI	CTAG	5 cut(s)	497, 585, 590, 711, 1091
GlaI	GCGC	2 cut(s)	642, 675
GluI	GCNGC	4 cut(s)	185, 236, 815, 1032
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	5 cut(s)	75, 138, 390, 479, 615
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	2 cut(s)	643, 676
Hin1II	CATG	2 cut(s)	611, 689
Hin6I	GCGC	2 cut(s)	641, 674
HinP1I	GCGC	2 cut(s)	641, 674
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	7 cut(s)	78, 155, 346, 754, 913, 1145, 1170
HpaII	CCGG	5 cut(s)	75, 138, 390, 479, 615
HphI	GGTGA	3 cut(s)	150, 358, 629
Hpy166II	GTNNAC	2 cut(s)	776, 893
Hpy188I	TCNGA	8 cut(s)	151, 169, 211, 275, 635, 703, 804, 912
Hpy188III	TCNNGA	6 cut(s)	75, 260, 376, 382, 721, 1230
Hpy8I	GTNNAC	2 cut(s)	776, 893
Hpy99I	CGWCG	3 cut(s)	155, 377, 943
HpyAV	CCTTC	4 cut(s)	132, 534, 818, 869
HpyCH4III	ACNGT	5 cut(s)	215, 339, 373, 462, 1130
HpyCH4IV	ACGT	3 cut(s)	306, 778, 938
HpyCH4V	TGCA	3 cut(s)	235, 865, 1047
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 291
HpyF3I	CTNAG	4 cut(s)	510, 801, 949, 1121
HpySE526I	ACGT	3 cut(s)	306, 778, 938
Hsp92II	CATG	2 cut(s)	611, 689
HspAI	GCGC	2 cut(s)	641, 674
Kpn2I	TCCGGA	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	389
KroNI	GCCGGC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	8 cut(s)	245, 378, 384, 558, 627, 715, 742, 1188
LmnI	GCTCC	4 cut(s)	97, 481, 617, 1075
Lsp1109I	GCAGC	4 cut(s)	171, 247, 801, 1018
LweI	GCATC	5 cut(s)	222, 628, 778, 852, 970
MaeI	CTAG	5 cut(s)	497, 585, 590, 711, 1091
MaeII	ACGT	3 cut(s)	306, 778, 938
MaeIII	GTNAC	3 cut(s)	302, 650, 1124
MalI	GATC	8 cut(s)	247, 380, 386, 560, 629, 717, 744, 1190
MboI	GATC	8 cut(s)	245, 378, 384, 558, 627, 715, 742, 1188
MflI	RGATCY	1 cut(s)	1188
MhlI	GDGCHC	2 cut(s)	94, 320
MluCI	AATT	9 cut(s)	113, 265, 623, 791, 820, 866, 879, 906, 1197
MluI	ACGCGT	1 cut(s)	328
MmeI	TCCRAC	2 cut(s)	174, 828
MnlI	CCTC	9 cut(s)	145, 171, 322, 465, 505, 936, 1045, 1066, 1147
MroI	TCCGGA	1 cut(s)	74
MroNI	GCCGGC	1 cut(s)	389
MseI	TTAA	4 cut(s)	189, 555, 678, 1200
MslI	CAYNNNNRTG	1 cut(s)	1002
MspA1I	CMGCKG	1 cut(s)	814
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	5 cut(s)	75, 138, 390, 479, 615
MvnI	CGCG	2 cut(s)	330, 377
MwoI	GCNNNNNNNGC	2 cut(s)	181, 291
NaeI	GCCGGC	1 cut(s)	391
NdeII	GATC	8 cut(s)	245, 378, 384, 558, 627, 715, 742, 1188
NgoMIV	GCCGGC	1 cut(s)	389
NheI	GCTAGC	1 cut(s)	1090
NlaIII	CATG	2 cut(s)	611, 689
NlaIV	GGNNCC	6 cut(s)	142, 477, 571, 613, 1077, 1190
NmuCI	GTSAC	1 cut(s)	302
NruI	TCGCGA	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PdiI	GCCGGC	1 cut(s)	391
PfeI	GAWTC	7 cut(s)	78, 155, 346, 754, 913, 1145, 1170
PkrI	GCNGC	4 cut(s)	186, 237, 816, 1033
Ppu21I	YACGTR	1 cut(s)	307
PshAI	GACNNNNGTC	1 cut(s)	937
Psp124BI	GAGCTC	1 cut(s)	94
PspN4I	GGNNCC	6 cut(s)	142, 477, 571, 613, 1077, 1190
PspPI	GGNCC	1 cut(s)	140
PspXI	VCTCGAGB	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	817
PsuI	RGATCY	1 cut(s)	1188
PvuII	CAGCTG	1 cut(s)	814
RruI	TCGCGA	1 cut(s)	377
RsaI	GTAC	2 cut(s)	441, 832
RsaNI	GTAC	2 cut(s)	440, 831
RseI	CAYNNNNRTG	1 cut(s)	1002
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	4 cut(s)	189, 555, 678, 1200
SatI	GCNGC	4 cut(s)	185, 236, 815, 1032
Sau3AI	GATC	8 cut(s)	245, 378, 384, 558, 627, 715, 742, 1188
Sau96I	GGNCC	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	94, 320
SfaNI	GCATC	5 cut(s)	222, 628, 778, 852, 970
Sfr274I	CTCGAG	1 cut(s)	313
SlaI	CTCGAG	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	1002
SmlI	CTYRAG	3 cut(s)	313, 677, 719
SmoI	CTYRAG	3 cut(s)	313, 677, 719
Sse9I	AATT	9 cut(s)	113, 265, 623, 791, 820, 866, 879, 906, 1197
SsiI	CCGC	3 cut(s)	84, 350, 402
SspMI	CTAG	5 cut(s)	497, 585, 590, 711, 1091
SstI	GAGCTC	1 cut(s)	94
TaaI	ACNGT	5 cut(s)	215, 339, 373, 462, 1130
TaiI	ACGT	3 cut(s)	309, 781, 941
TaqI	TCGA	4 cut(s)	314, 445, 941, 1168
TasI	AATT	9 cut(s)	113, 265, 623, 791, 820, 866, 879, 906, 1197
TatI	WGTACW	2 cut(s)	439, 830
TfiI	GAWTC	7 cut(s)	78, 155, 346, 754, 913, 1145, 1170
Tru1I	TTAA	4 cut(s)	189, 555, 678, 1200
Tru9I	TTAA	4 cut(s)	189, 555, 678, 1200
TscAI	CASTG	4 cut(s)	514, 1004, 1033, 1135
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	4 cut(s)	184, 235, 814, 1031
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	6 cut(s)	29, 596, 636, 784, 1012, 1149
TspGWI	ACGGA	2 cut(s)	244, 290
TspRI	CASTG	4 cut(s)	514, 1004, 1033, 1135
Vha464I	CTTAAG	1 cut(s)	677
XapI	RAATTY	3 cut(s)	113, 820, 906
XcmI	CCANNNNNNNNNTGG	1 cut(s)	692
XhoI	CTCGAG	1 cut(s)	313
XspI	CTAG	5 cut(s)	497, 585, 590, 711, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.