Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005836

Physical Location & Seq

Genomic Coordinates Reverse (-)

35077179 .. 35077954

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0244900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCGTTGATCCCCAGAACCACACTCACACTCACACTCCCCAGAACACTCCTCGCCCTTCGATCCTTCTCCTGCAAAATGTCATCCGACCCGCCACCGTTGACTCACTCCCTCACTCTCCCGAGTCAACTCGCCGCCGAGCCCGTCCAGATCGTCGCCGCCCCCCACATCTCCTCCTCCCAGTTCAGGAGCGCTATTGATTCGTCTTTGTTTAAGCAGTGGCTGAAGAACATGGAGAGTGAAACTGGGATTCTAAGCGACGGTTCTTTGGCTCTGAAACGAGTTCTAATTCAGGGTGTGGATATGTTTGGAAAGAGGATTGGGTTTCTGAAGTTTGAAGCAGATGTGATTGATAAAGAAACAGGGGAAAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGGCTTATGCTGTTCTTACTGAACAGGTAGCTCTTCATTTCATTTTGGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006996 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010109 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0015979 GO:0016020 GO:0016043 GO:0019222 GO:0019684 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031323 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042548 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0065007 GO:0071840 GO:0098656 GO:0098660 GO:0098661 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bestrophin

Protein Analysis

164

Amino Acids

17.83

Weight (kDa)

7.9

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45870 AT2G45870 AT2G45870 AT3G61320 AT3G61320 AT3G61320 AT3G61320
fragaria_vesca	FvH4_7g14170
malus_domestica	MD01G1057600.v1.1 MD01G1202300.v1.1 MD07G1139000.v1.1
prunus_persica	Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1
pyrus_communis	pycom01g08760 pycom07g13600
rosa_chinensis	RchiOBHm_Chr1g0355071
rosa_laevigata	RLG00000028179
rosa_multiflora	Rmu_sc0003115.1_g000030
rosa_roxburghii	Rroxscaffold_4G00300690
rosa_rugosa	Rorug01G0244900
rosa_samantha	Rh1AG257200 Rh1BG226500 Rh1CG240800 Rh1DG254100 Rh4DG156900
rosa_wichuraiana	Rw0G011210 Rw1G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	396
AciI	CCGC	4 cut(s)	92, 135, 159, 396
AclWI	GGATC	2 cut(s)	4, 57
AcuI	CTGAAG	2 cut(s)	245, 350
AfeI	AGCGCT	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	2 cut(s)	410, 470
AluI	AGCT	2 cut(s)	410, 470
AlwI	GGATC	2 cut(s)	4, 57
AlwNI	CAGNNNCTG	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	121
Aor51HI	AGCGCT	1 cut(s)	193
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	405
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	2 cut(s)	135, 159
BlsI	GCNGC	2 cut(s)	136, 160
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	1 cut(s)	398
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	2 cut(s)	175, 255
BmuI	ACTGGG	2 cut(s)	175, 255
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 158, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	2 cut(s)	181, 250
BseBI	CCWGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	181, 250
BseRI	GAGGAG	3 cut(s)	41, 163, 166
Bsh1236I	CGCG	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	9, 62, 150
BspACI	CCGC	4 cut(s)	92, 135, 159, 396
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	2 cut(s)	4, 57
BspQI	GCTCTTC	1 cut(s)	477
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	181, 250
BssAI	RCCGGY	1 cut(s)	400
BssMI	GATC	3 cut(s)	9, 62, 150
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	99, 263
Bst6I	CTCTTC	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	3 cut(s)	12, 65, 153
BstMBI	GATC	3 cut(s)	9, 62, 150
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	394
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	398
CpoI	CGGWCCG	1 cut(s)	398
CspI	CGGWCCG	1 cut(s)	398
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	7 cut(s)	142, 223, 272, 404, 410, 443, 470
CviKI_1	RGCY	7 cut(s)	142, 223, 272, 404, 410, 443, 470
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	3 cut(s)	11, 64, 152
DpnII	GATC	3 cut(s)	9, 62, 150
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	398
Eco47III	AGCGCT	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	245, 350
Eco88I	CYCGRG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	235
FaiI	YATR	4 cut(s)	233, 305, 419, 447
FatI	CATG	1 cut(s)	231
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	135, 159
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	135, 159
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	2 cut(s)	135, 159
HaeII	RGCGCY	1 cut(s)	195
HapII	CCGG	1 cut(s)	401
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	2 cut(s)	102, 128
HindII	GTYRAC	2 cut(s)	102, 128
HinfI	GANTC	5 cut(s)	103, 124, 200, 250, 428
HpaII	CCGG	1 cut(s)	401
Hpy166II	GTNNAC	2 cut(s)	102, 128
Hpy188I	TCNGA	4 cut(s)	88, 276, 330, 433
Hpy188III	TCNNGA	3 cut(s)	121, 148, 187
Hpy8I	GTNNAC	2 cut(s)	102, 128
Hpy99I	CGWCG	2 cut(s)	158, 263
HpyAV	CCTTC	2 cut(s)	68, 76
HpyCH4III	ACNGT	2 cut(s)	99, 263
HpyCH4V	TGCA	2 cut(s)	75, 392
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	9, 62, 150
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	189
MalI	GATC	3 cut(s)	11, 64, 152
MboI	GATC	3 cut(s)	9, 62, 150
MboII	GAAGA	2 cut(s)	238, 464
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	97, 133
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	62, 122, 184, 187, 309, 427
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	396
NdeII	GATC	3 cut(s)	9, 62, 150
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	200, 250, 428
PkrI	GCNGC	2 cut(s)	136, 160
PleI	GAGTC	2 cut(s)	97, 132
PpsI	GAGTC	2 cut(s)	97, 132
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	398
PstNI	CAGNNNCTG	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	485
Rsr2I	CGGWCCG	1 cut(s)	398
RsrII	CGGWCCG	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	135, 159
Sau3AI	GATC	3 cut(s)	9, 62, 150
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	97, 133
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	5 cut(s)	375, 382, 412, 468, 472
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	485
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	4 cut(s)	92, 135, 159, 396
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	99, 263
TaqI	TCGA	1 cut(s)	61
TasI	AATT	1 cut(s)	288
TauI	GCSGC	2 cut(s)	137, 161
TfiI	GAWTC	3 cut(s)	200, 250, 428
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	464, 469
TspRI	CASTG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.