Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005836

Physical Location & Seq

Genomic Coordinates Reverse (-)

31415794 .. 31416667

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG156900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGACTCACGCTGCGGCGACGGAGTCTTCATCCAAGTGTCCGGCCGACTCAACGACGATCCATATTCGATCTTTGGTGAAGCAACCCACAAACTGCATCAAACCCACCTCCAACCTCATCTTCTCTTCCAACTCTGTCCCCAAGACTTTCTCAAAATTACGTTTACCCCTTCCCCTAAATCCTAGAACCCTCTGCTCTTCCATCTCTATCTTTAATTCCTTCGTTGATTATTTTCACCTTGGTGGTAGTGGTGATTGCAATTGGAGTGGCTTCCGAGGATTTCCCCATGTTGAGGTACTCAGCTTTGCCGACACGGGCGCTGTCATTGGTGCTCCTATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006996 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010109 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0015979 GO:0016020 GO:0016043 GO:0019222 GO:0019684 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031323 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042548 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0065007 GO:0071840 GO:0098656 GO:0098660 GO:0098661 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bestrophin

Protein Analysis

114

Amino Acids

12.23

Weight (kDa)

8.84

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45870 AT2G45870 AT2G45870 AT3G61320 AT3G61320 AT3G61320 AT3G61320
fragaria_vesca	FvH4_7g14170
malus_domestica	MD01G1057600.v1.1 MD01G1202300.v1.1 MD07G1139000.v1.1
prunus_persica	Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1
pyrus_communis	pycom01g08760 pycom07g13600
rosa_chinensis	RchiOBHm_Chr1g0355071
rosa_laevigata	RLG00000028179
rosa_multiflora	Rmu_sc0003115.1_g000030
rosa_roxburghii	Rroxscaffold_4G00300690
rosa_rugosa	Rorug01G0244900
rosa_samantha	Rh1AG257200 Rh1BG226500 Rh1CG240800 Rh1DG254100 Rh4DG156900
rosa_wichuraiana	Rw0G011210 Rw1G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	42
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	1 cut(s)	303
AluI	AGCT	1 cut(s)	303
Alw21I	GWGCWC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	320
AsuHPI	GGTGA	3 cut(s)	88, 227, 263
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	334
BccI	CCATC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	183
BfoI	RGCGCY	1 cut(s)	321
BisI	GCNGC	2 cut(s)	12, 15
BlsI	GCNGC	2 cut(s)	13, 16
BmsI	GCATC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	238, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
BseDI	CCNNGG	2 cut(s)	238, 274
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	313
BseX3I	CGGCCG	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	57, 68
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	312
BspPI	GGATC	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	238, 274
BssMI	GATC	2 cut(s)	57, 68
BssT1I	CCWWGG	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	130, 202
BstDEI	CTNAG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	2 cut(s)	60, 71
BstMBI	GATC	2 cut(s)	57, 68
BstMCI	CGRYCG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	18
BstZI	CGGCCG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	29
CfoI	GCGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	296
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	3 cut(s)	44, 270, 303
CviKI_1	RGCY	3 cut(s)	44, 270, 303
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	2 cut(s)	59, 70
DpnII	GATC	2 cut(s)	57, 68
EaeI	YGGCCR	1 cut(s)	42
EagI	CGGCCG	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	130, 202
EarI	CTCTTC	2 cut(s)	130, 202
EclXI	CGGCCG	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	238
Eco52I	CGGCCG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	1 cut(s)	290
FaiI	YATR	2 cut(s)	63, 288
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	12, 15
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	12, 15
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	2 cut(s)	12, 15
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HinfI	GANTC	3 cut(s)	4, 23, 47
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	3 cut(s)	88, 227, 263
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	164
Hpy99I	CGWCG	2 cut(s)	22, 58
HpyAV	CCTTC	2 cut(s)	179, 229
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	96, 258
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	57, 68
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	1 cut(s)	54
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	160
MalI	GATC	2 cut(s)	59, 70
MboI	GATC	2 cut(s)	57, 68
MboII	GAAGA	4 cut(s)	18, 112, 117, 189
MfeI	CAATTG	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	3 cut(s)	155, 214, 259
MlyI	GAGTC	2 cut(s)	32, 41
MmeI	TCCRAC	2 cut(s)	135, 153
MnlI	CCTC	5 cut(s)	118, 125, 200, 269, 286
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	34, 240
MspI	CCGG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	259
NdeII	GATC	2 cut(s)	57, 68
NlaIII	CATG	1 cut(s)	290
OliI	CACNNNNGTG	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	202
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	13, 16
PleI	GAGTC	2 cut(s)	31, 41
PpsI	GAGTC	2 cut(s)	31, 41
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	2 cut(s)	34, 240
SapI	GCTCTTC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	12, 15
Sau3AI	GATC	2 cut(s)	57, 68
SchI	GAGTC	2 cut(s)	32, 41
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	6 cut(s)	110, 117, 163, 240, 297, 305
SfaNI	GCATC	1 cut(s)	105
SmiMI	CAYNNNNRTG	2 cut(s)	34, 240
Sse9I	AATT	3 cut(s)	155, 214, 259
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	238
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	67
TasI	AATT	3 cut(s)	155, 214, 259
TauI	GCSGC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	35
Tth111I	GACNNNGTC	1 cut(s)	22
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.