Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005836

Physical Location & Seq

Genomic Coordinates Forward (+)

22693421 .. 22695754

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61320.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGTATCAATCCATGAATCTATCAGTTTCTTCCAATTTCACTCACCGATCACTCCTCGAATCACGATTTCCTATATTCTCCACCGGATTCCGCAAATCCGTCAATCTCAAACCTCCCCGTGTCTCATCTGGTCCTGAATCCAACGATTCAGGTCACGAAACCTTAACCGATAAGCTTATCCATCTCCTCAGAGCTGTTCCAGATTGGGCAGACGAGATTAAAGAGCGTGGGATGCAGCAGAAACGCTCTCTCTACACACACGAGAAATGGGTTGAACATAGAAGCTCTCTTCGCCATGTGCGTCATCTACTCTCGAGCTTTTCTTCACGAGTTATACTCTCCCTGATTCCACCTGTTTTCTTCTTCACAAGCGTCGCGGTTGTGATCGCTAGCTACAACTCCGCCGTGGCTTTGGATTGGCTTCCTGGTATTTTTCCAATTCTTCGATCCTCGTCGTTGCCGTATCAGCTCACAGCTCCGGCTTTGGCTCTTCTTCTGGTCTTTCGTACGGAGGCTTCGTATTCTAGGTATGAAGAAGGAAGGAAAGCTTGGGTTGGGATTATTGCTGGAACTAATGATTTAGCTAGGCAAGTTATTTGTTCCGTTGATAGCTCCGGTGATGAATTGATCATCAAAGATTTGCTTCTTCGTTACATTGCAGCTTTCCCTGTTGCTCTTAAGTGTCATGTGATTTATGGTTCAGATATAGCAAGAGATCTCCGGAACTTGATAGAAGCAGATGACTTATCTCTGATTCTTCAAGCAAAGCATCGTCCGCGTTGTGTAATCGAGTTCATTTCTCAGAGCATTCAGTTGCTAAAACTAGACGATGCAAAGAGAGATTTGTTGGAATCAAAGATGCTGCATTTACATGAAGGAATTGGAGTTTGTGAACAACTCATGGGCATTCCGATTCCTCTCTCTTACACACGCTTAACCTCGAGGTTTTTAGTCTTTTGGCATCTAACTCTCCCAATCATTCTCTGGGATGAATGCCATTGGATTGTTGTTCCTGCTACTTTCATTAGTGCTGCCTCTCTGTTCTGCATAGAAGAAGTGGGTGTTCTTATAGAAGAACCATTTCCTATGTTGGCCTTAGATGAGCTTTGCGATCTTGTGCATAGTAACATCCAAGAAGCTGTTAAATCTGAGAAAGTCATACGTAACCGCATCATTGCAAAGATAAAGCTCCATGAATTCAAGCACTCATCAAATGGTCGCCATAGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006996 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010109 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0015979 GO:0016020 GO:0016043 GO:0019222 GO:0019684 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031323 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042548 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0065007 GO:0071840 GO:0098656 GO:0098660 GO:0098661 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bestrophin

Protein Analysis

410

Amino Acids

46.54

Weight (kDa)

8.13

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bestrophin_2	PF25539	89 - 353	1.4e-72	Bacterial/Fungal Bestrophin protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45870 AT2G45870 AT2G45870 AT3G61320 AT3G61320 AT3G61320 AT3G61320
fragaria_vesca	FvH4_7g14170
malus_domestica	MD01G1057600.v1.1 MD01G1202300.v1.1 MD07G1139000.v1.1
prunus_persica	Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1
pyrus_communis	pycom01g08760 pycom07g13600
rosa_chinensis	RchiOBHm_Chr1g0355071
rosa_laevigata	RLG00000028179
rosa_multiflora	Rmu_sc0003115.1_g000030
rosa_roxburghii	Rroxscaffold_4G00300690
rosa_rugosa	Rorug01G0244900
rosa_samantha	Rh1AG257200 Rh1BG226500 Rh1CG240800 Rh1DG254100 Rh4DG156900
rosa_wichuraiana	Rw0G011210 Rw1G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	940
AccII	CGCG	2 cut(s)	377, 778
AccIII	TCCGGA	1 cut(s)	720
AciI	CCGC	5 cut(s)	91, 377, 402, 776, 1168
AclWI	GGATC	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	1196
AfaI	GTAC	1 cut(s)	508
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	3 cut(s)	275, 761, 1201
AjnI	CCWGG	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	441
Ama87I	CYCGRG	2 cut(s)	313, 940
Aor13HI	TCCGGA	1 cut(s)	720
AoxI	GGCC	1 cut(s)	1092
ApeKI	GCWGC	4 cut(s)	235, 659, 862, 1031
ApoI	RAATTY	1 cut(s)	1196
Asp700I	GAANNNNTTC	1 cut(s)	1080
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	35, 629
AsuNHI	GCTAGC	1 cut(s)	389
AvaI	CYCGRG	2 cut(s)	313, 940
AvaII	GGWCC	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	499, 531
BauI	CACGAG	2 cut(s)	260, 327
BbvI	GCAGC	4 cut(s)	247, 671, 849, 1018
BccI	CCATC	1 cut(s)	189
BceAI	ACGGC	2 cut(s)	389, 445
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	4 cut(s)	390, 525, 585, 824
BfrI	CTTAAG	1 cut(s)	677
BglII	AGATCT	2 cut(s)	715, 1226
BisI	GCNGC	4 cut(s)	236, 660, 863, 1032
BlsI	GCNGC	4 cut(s)	237, 661, 864, 1033
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	2 cut(s)	313, 940
BmgT120I	GGNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	6 cut(s)	222, 778, 820, 849, 970, 1179
BmtI	GCTAGC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	321, 353
BsaAI	YACGTR	1 cut(s)	1163
BsaJI	CCNNGG	1 cut(s)	405
BsaWI	WCCGGW	3 cut(s)	83, 614, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bse3DI	GCAATG	2 cut(s)	654, 1173
BseAI	TCCGGA	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	3 cut(s)	237, 994, 1128
BseMI	GCAATG	2 cut(s)	654, 1173
BseMII	CTCAG	3 cut(s)	202, 815, 1140
BseRI	GAGGAG	2 cut(s)	44, 176
BseXI	GCAGC	4 cut(s)	247, 671, 849, 1018
Bsh1236I	CGCG	2 cut(s)	377, 778
BshFI	GGCC	1 cut(s)	1094
BsiHKCI	CYCGRG	2 cut(s)	313, 940
BsiSI	CCGG	4 cut(s)	84, 479, 615, 721
BsiWI	CGTACG	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	127
BsmI	GAATGC	3 cut(s)	807, 906, 998
BsnI	GGCC	1 cut(s)	1094
BsoBI	CYCGRG	2 cut(s)	313, 940
Bsp13I	TCCGGA	1 cut(s)	720
Bsp143I	GATC	7 cut(s)	47, 384, 446, 627, 715, 1111, 1226
BspACI	CCGC	5 cut(s)	91, 377, 402, 776, 1168
BspANI	GGCC	1 cut(s)	1094
BspCNI	CTCAG	3 cut(s)	201, 814, 1141
BspEI	TCCGGA	1 cut(s)	720
BspFNI	CGCG	2 cut(s)	377, 778
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	441
BspQI	GCTCTTC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	677
BsrDI	GCAATG	2 cut(s)	654, 1173
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	7 cut(s)	47, 384, 446, 627, 715, 1111, 1226
BssSI	CACGAG	2 cut(s)	260, 327
Bst2BI	CACGAG	2 cut(s)	260, 327
Bst2UI	CCWGG	1 cut(s)	426
Bst6I	CTCTTC	2 cut(s)	294, 495
BstAFI	CTTAAG	1 cut(s)	677
BstBAI	YACGTR	1 cut(s)	1163
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	4 cut(s)	188, 801, 1096, 1149
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	237, 994, 1128
BstFNI	CGCG	2 cut(s)	377, 778
BstKTI	GATC	7 cut(s)	50, 387, 449, 630, 718, 1114, 1229
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	7 cut(s)	47, 384, 446, 627, 715, 1111, 1226
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 291, 466, 775
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	424
BstSNI	TACGTA	1 cut(s)	1163
BstUI	CGCG	2 cut(s)	377, 778
BstV1I	GCAGC	4 cut(s)	247, 671, 849, 1018
BstX2I	RGATCY	2 cut(s)	715, 1226
BstYI	RGATCY	2 cut(s)	715, 1226
BsuRI	GGCC	1 cut(s)	1094
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	237, 994, 1128
Cac8I	GCNNGC	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	2 cut(s)	290, 361
Csp6I	GTAC	1 cut(s)	507
CviAII	CATG	6 cut(s)	13, 296, 686, 872, 901, 1193
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	4 cut(s)	188, 801, 1096, 1149
DpnI	GATC	7 cut(s)	49, 386, 448, 629, 717, 1113, 1228
DpnII	GATC	7 cut(s)	47, 384, 446, 627, 715, 1111, 1226
Eam1104I	CTCTTC	2 cut(s)	294, 495
EarI	CTCTTC	2 cut(s)	294, 495
EciI	GGCGGA	1 cut(s)	391
Eco105I	TACGTA	1 cut(s)	1163
Eco47I	GGWCC	1 cut(s)	131
Eco88I	CYCGRG	2 cut(s)	313, 940
EcoRI	GAATTC	1 cut(s)	1196
EcoRII	CCWGG	1 cut(s)	424
FaeI	CATG	6 cut(s)	16, 299, 689, 875, 904, 1196
FalI	AAGNNNNNCTT	4 cut(s)	532, 564, 627, 659
FatI	CATG	6 cut(s)	12, 295, 685, 871, 900, 1192
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	4 cut(s)	236, 660, 863, 1032
FokI	GGATG	3 cut(s)	244, 1001, 1115
Fsp4HI	GCNGC	4 cut(s)	236, 660, 863, 1032
FspBI	CTAG	4 cut(s)	390, 525, 585, 824
GluI	GCNGC	4 cut(s)	236, 660, 863, 1032
HaeIII	GGCC	1 cut(s)	1094
HapII	CCGG	4 cut(s)	84, 479, 615, 721
HgaI	GACGC	2 cut(s)	290, 361
Hin1II	CATG	6 cut(s)	16, 299, 689, 875, 904, 1196
HindIII	AAGCTT	2 cut(s)	173, 546
HinfI	GANTC	9 cut(s)	16, 59, 87, 137, 146, 346, 754, 851, 913
HpaII	CCGG	4 cut(s)	84, 479, 615, 721
HphI	GGTGA	2 cut(s)	35, 629
Hpy166II	GTNNAC	1 cut(s)	893
Hpy188I	TCNGA	6 cut(s)	191, 703, 753, 804, 912, 1150
Hpy188III	TCNNGA	8 cut(s)	63, 134, 155, 200, 313, 327, 721, 1230
Hpy8I	GTNNAC	1 cut(s)	893
Hpy99I	CGWCG	2 cut(s)	377, 457
HpyAV	CCTTC	3 cut(s)	530, 534, 869
HpyCH4IV	ACGT	1 cut(s)	1162
HpyCH4V	TGCA	7 cut(s)	235, 659, 833, 865, 1047, 1120, 1178
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 291, 466, 775
HpyF3I	CTNAG	4 cut(s)	188, 801, 1096, 1149
HpySE526I	ACGT	1 cut(s)	1162
Hsp92II	CATG	6 cut(s)	16, 299, 689, 875, 904, 1196
Kpn2I	TCCGGA	1 cut(s)	720
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	7 cut(s)	47, 384, 446, 627, 715, 1111, 1226
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	3 cut(s)	481, 617, 1194
Lsp1109I	GCAGC	4 cut(s)	247, 671, 849, 1018
LweI	GCATC	6 cut(s)	222, 778, 820, 849, 970, 1179
MaeI	CTAG	4 cut(s)	390, 525, 585, 824
MaeII	ACGT	1 cut(s)	1162
MaeIII	GTNAC	4 cut(s)	152, 650, 1124, 1163
MalI	GATC	7 cut(s)	49, 386, 448, 629, 717, 1113, 1228
MboI	GATC	7 cut(s)	47, 384, 446, 627, 715, 1111, 1226
MflI	RGATCY	2 cut(s)	715, 1226
MluCI	AATT	5 cut(s)	34, 438, 623, 879, 1196
MmeI	TCCRAC	2 cut(s)	165, 828
MnlI	CCTC	9 cut(s)	65, 123, 197, 460, 505, 927, 936, 949, 1045
MroI	TCCGGA	1 cut(s)	720
MroXI	GAANNNNTTC	1 cut(s)	1080
MseI	TTAA	5 cut(s)	164, 219, 678, 935, 1143
MslI	CAYNNNNRTG	1 cut(s)	870
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	4 cut(s)	84, 479, 615, 721
MspR9I	CCNGG	1 cut(s)	426
Mva1269I	GAATGC	3 cut(s)	807, 906, 998
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	2 cut(s)	377, 778
MwoI	GCNNNNNNNGC	4 cut(s)	232, 291, 466, 775
NdeII	GATC	7 cut(s)	47, 384, 446, 627, 715, 1111, 1226
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	6 cut(s)	16, 299, 689, 875, 904, 1196
NmuCI	GTSAC	1 cut(s)	152
PaeR7I	CTCGAG	2 cut(s)	313, 940
PciSI	GCTCTTC	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	3 cut(s)	298, 458, 515
PctI	GAATGC	3 cut(s)	807, 906, 998
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	9 cut(s)	16, 59, 87, 137, 146, 346, 754, 851, 913
Pfl23II	CGTACG	1 cut(s)	506
PkrI	GCNGC	4 cut(s)	237, 661, 864, 1033
Ppu21I	YACGTR	1 cut(s)	1163
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspLI	CGTACG	1 cut(s)	506
PspPI	GGNCC	1 cut(s)	131
PspXI	VCTCGAGB	1 cut(s)	940
PsuI	RGATCY	2 cut(s)	715, 1226
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
RseI	CAYNNNNRTG	1 cut(s)	870
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	5 cut(s)	164, 219, 678, 935, 1143
SatI	GCNGC	4 cut(s)	236, 660, 863, 1032
Sau3AI	GATC	7 cut(s)	47, 384, 446, 627, 715, 1111, 1226
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	426
SfaNI	GCATC	6 cut(s)	222, 778, 820, 849, 970, 1179
Sfr274I	CTCGAG	2 cut(s)	313, 940
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	2 cut(s)	313, 940
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	3 cut(s)	313, 677, 940
SmoI	CTYRAG	3 cut(s)	313, 677, 940
SnaBI	TACGTA	1 cut(s)	1163
Sse9I	AATT	5 cut(s)	34, 438, 623, 879, 1196
SsiI	CCGC	5 cut(s)	91, 377, 402, 776, 1168
SspMI	CTAG	4 cut(s)	390, 525, 585, 824
StyD4I	CCNGG	1 cut(s)	424
TaiI	ACGT	1 cut(s)	1165
TaqI	TCGA	5 cut(s)	57, 314, 445, 789, 941
TasI	AATT	5 cut(s)	34, 438, 623, 879, 1196
TfiI	GAWTC	9 cut(s)	16, 59, 87, 137, 146, 346, 754, 851, 913
Tru1I	TTAA	5 cut(s)	164, 219, 678, 935, 1143
Tru9I	TTAA	5 cut(s)	164, 219, 678, 935, 1143
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	4 cut(s)	235, 659, 862, 1031
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	8 cut(s)	29, 546, 636, 784, 888, 1005, 1012, 1209
TspGWI	ACGGA	3 cut(s)	88, 524, 592
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	1196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	981
XhoI	CTCGAG	2 cut(s)	313, 940
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	4 cut(s)	390, 525, 585, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.